Variant report

Variant	rs571467566
Chromosome Location	chr15:58357616-58357617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58306217..58308259-chr15:58356597..58358737,2	K562	blood:
2	chr15:58356974..58359469-chr15:60688408..60691704,3	K562	blood:
3	chr15:58328560..58331091-chr15:58356467..58358929,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AQP9-1	chr15:58357423-58357940	ENSG00000245722
2	lnc-AQP9-1	chr15:58357423-58357940	ENSG00000259285.1
3	lnc-AQP9-1	chr15:58357428-58357940	NONHSAT044091

No data

Variant related genes	Relation type
ENSG00000182718	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3427988	chr15:58356685-58359533	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58353400-58358800	Active TSS	K562	blood
2	chr15:58353600-58359000	Active TSS	Fetal Kidney	kidney
3	chr15:58354200-58358800	Active TSS	Ovary	ovary
4	chr15:58354400-58358800	Active TSS	Right Atrium	heart
5	chr15:58357000-58358800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
7	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
8	chr15:58357200-58357800	Bivalent/Poised TSS	Fetal Lung	lung
9	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
10	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
11	chr15:58357200-58357800	Enhancers	Gastric	stomach
12	chr15:58357200-58358000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:58357200-58358000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr15:58357200-58358000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
15	chr15:58357200-58358200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr15:58357200-58358200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
17	chr15:58357200-58358200	Bivalent Enhancer	Fetal Thymus	thymus
18	chr15:58357200-58358200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
19	chr15:58357200-58358400	Active TSS	Right Ventricle	heart
20	chr15:58357200-58358600	Bivalent/Poised TSS	Left Ventricle	heart
21	chr15:58357200-58358600	Bivalent/Poised TSS	NHLF	lung
22	chr15:58357200-58358800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:58357200-58358800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr15:58357200-58358800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr15:58357200-58358800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:58357200-58358800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
27	chr15:58357200-58358800	Flanking Active TSS	Pancreas	Pancrea
28	chr15:58357200-58358800	Bivalent/Poised TSS	Psoas Muscle	Psoas
29	chr15:58357200-58359000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr15:58357200-58359200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:58357400-58357800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
32	chr15:58357400-58357800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
33	chr15:58357400-58357800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
34	chr15:58357400-58357800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:58357400-58357800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr15:58357400-58357800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:58357400-58357800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
38	chr15:58357400-58357800	Flanking Bivalent TSS/Enh	Spleen	Spleen
39	chr15:58357400-58358000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:58357400-58358000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:58357400-58358000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:58357400-58358000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:58357400-58358000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr15:58357400-58358200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:58357400-58358200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
46	chr15:58357400-58358200	Bivalent/Poised TSS	Fetal Brain Female	brain
47	chr15:58357400-58358200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
48	chr15:58357400-58358400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
49	chr15:58357400-58358400	Flanking Bivalent TSS/Enh	HMEC	breast
50	chr15:58357400-58358600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

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