Variant report

Variant	rs571491728
Chromosome Location	chr6:25406127-25406128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr6:25404863-25406226	GM12878	blood:	n/a	n/a
2	EP300	chr6:25405042-25406147	GM12878	blood:	n/a	chr6:25405260-25405274 chr6:25405264-25405273 chr6:25405936-25405950
3	IKZF1	chr6:25405007-25406188	GM12878	blood:	n/a	chr6:25405768-25405780
4	NFIC	chr6:25404889-25406187	GM12878	blood:	n/a	n/a
5	SPI1	chr6:25404772-25406213	GM12878	blood:	n/a	chr6:25405260-25405269 chr6:25405801-25405810 chr6:25405835-25405848 chr6:25405838-25405847 chr6:25405836-25405849

Variant related genes	Relation type
ENSG00000253017	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25377400-25410600	Weak transcription	Gastric	stomach
2	chr6:25402200-25406200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:25402200-25409600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:25403600-25406400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:25403600-25408200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:25403800-25406400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:25403800-25406400	Weak transcription	Spleen	Spleen
8	chr6:25403800-25410600	Weak transcription	Pancreas	Pancrea
9	chr6:25404400-25406400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr6:25404400-25406600	Enhancers	Colonic Mucosa	Colon
11	chr6:25404400-25406600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:25404400-25407400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:25404400-25407600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:25404400-25410800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:25404800-25406600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:25405000-25406200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:25405000-25406200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:25405000-25406200	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:25405000-25406200	Enhancers	Fetal Intestine Large	intestine
20	chr6:25405000-25406200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr6:25405000-25406400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:25405000-25406600	Enhancers	Adipose Nuclei	Adipose
23	chr6:25405200-25406200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:25405200-25406200	Weak transcription	Lung	lung
25	chr6:25405200-25406400	Weak transcription	Right Atrium	heart
26	chr6:25405200-25407600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:25405200-25408000	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:25405200-25413200	Weak transcription	Fetal Lung	lung
29	chr6:25405400-25406200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr6:25405400-25406200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr6:25405400-25406400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:25405400-25406400	Weak transcription	Aorta	Aorta
33	chr6:25405400-25406400	Enhancers	Dnd41	blood
34	chr6:25405400-25406600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:25405400-25407600	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:25405600-25406200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:25405600-25406400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:25405600-25406400	Flanking Active TSS	GM12878-XiMat	blood
39	chr6:25405600-25406600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:25405600-25406600	Enhancers	NHEK	skin
41	chr6:25405800-25406200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr6:25405800-25406600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:25405800-25406600	Enhancers	Small Intestine	intestine
44	chr6:25405800-25407000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:25405800-25407200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:25405800-25407200	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:25405800-25407200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:25405800-25407800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:25405800-25408600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:25405800-25409000	Enhancers	Primary B cells from peripheral blood	blood

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