Variant report

Variant	rs571498947
Chromosome Location	chr6:29602488-29602489
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:29602212-29602503	GM12878	blood:	n/a	n/a
2	SPI1	chr6:29602230-29602549	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
GABBR1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv970100	chr6:29601673-29604881	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29599800-29602600	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr6:29601200-29602600	Flanking Active TSS	GM12878-XiMat	blood
3	chr6:29601200-29602800	Flanking Active TSS	Primary B cells from peripheral blood	blood
4	chr6:29601200-29603000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:29601600-29602600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:29601600-29602600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:29601800-29602600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:29601800-29602600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:29601800-29602600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:29601800-29602600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:29601800-29602600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:29601800-29602600	Enhancers	HMEC	breast
13	chr6:29601800-29603000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:29601800-29608600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:29602000-29603000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:29602200-29602600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:29602200-29602600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:29602200-29602800	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:29602400-29602600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:29602400-29602600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:29602400-29602600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:29602400-29602600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:29602400-29602600	Enhancers	Brain Germinal Matrix	brain
24	chr6:29602400-29602600	Enhancers	Fetal Brain Female	brain
25	chr6:29602400-29602600	Enhancers	Left Ventricle	heart
26	chr6:29602400-29602800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:29602400-29603200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:29602400-29604000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:29602400-29607200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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