Variant report

Variant	rs571516961
Chromosome Location	chr15:73454599-73454600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73449463..73451075-chr15:73451794..73454608,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HCN4-3	chr15:73454120-73454673	NONHSAT047134

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv527236	chr15:73421239-73469535	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv977734	chr15:73453781-73455781	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
2	chr15:73414400-73458200	Weak transcription	Colonic Mucosa	Colon
3	chr15:73429000-73456600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:73430200-73466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:73443600-73456600	Weak transcription	Fetal Kidney	kidney
6	chr15:73445600-73457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:73447200-73470000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:73447600-73457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:73447600-73457800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:73447800-73458000	Weak transcription	Brain Angular Gyrus	brain
11	chr15:73448000-73457000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:73448000-73469000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:73448600-73455800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:73448800-73458000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:73448800-73458000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:73449000-73458000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr15:73449200-73458000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:73449200-73458400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:73449200-73469000	Weak transcription	Ovary	ovary
20	chr15:73449400-73466600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:73449800-73454600	Weak transcription	Lung	lung
22	chr15:73449800-73456600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:73449800-73457800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:73450000-73454600	Weak transcription	Brain Substantia Nigra	brain
25	chr15:73450000-73454800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:73450000-73457400	Weak transcription	Fetal Intestine Large	intestine
27	chr15:73450000-73457600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73450000-73457800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:73450000-73458000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:73450000-73475400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:73450000-73477400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:73451000-73457800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:73451400-73456000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:73451400-73456400	Weak transcription	Fetal Intestine Small	intestine
35	chr15:73452200-73461200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:73452200-73470000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:73453000-73454800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:73453200-73455200	Enhancers	Brain Cingulate Gyrus	brain
39	chr15:73453200-73458400	Weak transcription	Gastric	stomach
40	chr15:73453800-73454800	Enhancers	Fetal Lung	lung
41	chr15:73453800-73455000	Enhancers	Fetal Stomach	stomach
42	chr15:73453800-73455200	Enhancers	Rectal Smooth Muscle	rectum
43	chr15:73454000-73454600	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr15:73454000-73454800	Enhancers	Right Atrium	heart
45	chr15:73454200-73454600	Enhancers	Colon Smooth Muscle	Colon
46	chr15:73454200-73454800	Enhancers	Stomach Smooth Muscle	stomach
47	chr15:73454400-73454800	Enhancers	Aorta	Aorta
48	chr15:73454400-73455200	Enhancers	Psoas Muscle	Psoas
49	chr15:73454400-73455400	Enhancers	Brain Hippocampus Middle	brain

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