Variant report

Variant	rs571521309
Chromosome Location	chr15:92397106-92397107
allele	-/GCG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:92396214-92397322	H1-neurons	neurons:	n/a	n/a
2	MAX	chr15:92395781-92397743	A549	lung:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
3	EP300	chr15:92396191-92397476	SK-N-SH	brain:	n/a	chr15:92397056-92397072 chr15:92396434-92396450 chr15:92397400-92397416 chr15:92396547-92396563 chr15:92397464-92397473 chr15:92396711-92396727 chr15:92397059-92397075 chr15:92397007-92397016
4	CTCF	chr15:92395406-92397813	SK-N-SH	brain:	n/a	chr15:92396518-92396534 chr15:92396517-92396535 chr15:92395772-92395785 chr15:92396239-92396252
5	CREB1	chr15:92396335-92397212	A549	lung:	n/a	n/a
6	POLR2A	chr15:92395220-92397694	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:92395957-92399695	Raji	blood:	n/a	n/a
8	POLR2A	chr15:92395889-92397569	A549	lung:	n/a	n/a
9	MAZ	chr15:92395442-92397945	IMR90	lung:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
10	MYC	chr15:92396519-92397167	MCF-7	breast:	n/a	n/a
11	REST	chr15:92395535-92398158	H1-neurons	neurons:	n/a	chr15:92395779-92395787 chr15:92397470-92397483 chr15:92397024-92397037 chr15:92397472-92397482
12	MAX	chr15:92396880-92397660	MCF-7	breast:	n/a	chr15:92397580-92397590
13	SMARCB1	chr15:92395842-92397972	Hela-S3	cervix:	n/a	n/a
14	RAD21	chr15:92395386-92398111	SK-N-SH	brain:	n/a	chr15:92396515-92396534 chr15:92397397-92397411 chr15:92395983-92395993 chr15:92397406-92397416 chr15:92396524-92396533 chr15:92396009-92396023
15	ZNF263	chr15:92395853-92397428	HEK293-T-REx	kidney:	n/a	n/a
16	SMC3	chr15:92395135-92398691	SK-N-SH	brain:	n/a	chr15:92395983-92395993 chr15:92396519-92396533
17	MAX	chr15:92396974-92397678	H1-hESC	embryonic stem cell:	n/a	chr15:92397580-92397590
18	POLR2A	chr15:92396475-92397287	MCF-7	breast:	n/a	n/a
19	POLR2A	chr15:92395743-92397699	HL-60	blood:	n/a	n/a
20	RCOR1	chr15:92396905-92397578	Hela-S3	cervix:	n/a	n/a
21	PBX3	chr15:92396590-92397155	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr15:92395801-92397158	NB4	blood:	n/a	n/a
23	HA-E2F1	chr15:92396206-92397633	Hela-S3	cervix:	n/a	chr15:92397093-92397100 chr15:92396338-92396349 chr15:92397093-92397100 chr15:92397093-92397100 chr15:92396542-92396554 chr15:92397582-92397591 chr15:92396333-92396347 chr15:92396339-92396349
24	E2F6	chr15:92396923-92397162	K562	blood:	n/a	chr15:92397093-92397100 chr15:92397093-92397100 chr15:92397093-92397100
25	TEAD4	chr15:92396242-92397209	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr15:92396092-92397145	A549	lung:	n/a	n/a
27	POLR2A	chr15:92396179-92397220	Gliobla	brain:	n/a	n/a
28	POLR2A	chr15:92396175-92398046	H1-neurons	neurons:	n/a	n/a
29	MAX	chr15:92395823-92397708	Hela-S3	cervix:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
30	E2F6	chr15:92396925-92397165	K562	blood:	n/a	chr15:92397093-92397100 chr15:92397093-92397100 chr15:92397093-92397100
31	POLR2A	chr15:92396422-92397444	MCF-7	breast:	n/a	n/a
32	SIN3A	chr15:92397003-92397509	H1-hESC	embryonic stem cell:	n/a	chr15:92397479-92397492
33	POLR2A	chr15:92396856-92397159	A549	lung:	n/a	n/a
34	MAZ	chr15:92395754-92397651	Hela-S3	cervix:	n/a	chr15:92397580-92397590
35	POLR2A	chr15:92396290-92397154	A549	lung:	n/a	n/a
36	CHD2	chr15:92395859-92397574	Hela-S3	cervix:	n/a	chr15:92397086-92397096 chr15:92396541-92396551
37	MAX	chr15:92395662-92397889	A549	lung:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
38	MAX	chr15:92395825-92398471	NB4	blood:	n/a	chr15:92397690-92397706 chr15:92398140-92398149 chr15:92397580-92397590
39	POLR2A	chr15:92395896-92397187	A549	lung:	n/a	n/a
40	SIN3AK20	chr15:92396333-92397579	PANC-1	pancreas:	n/a	n/a
41	PBX3	chr15:92396658-92397121	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3324058	chr15:92395773-92398821	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3363259	chr15:92395873-92398346	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92395200-92397600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:92395600-92397600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:92395600-92398000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:92395600-92398000	Active TSS	HSMMtube	muscle
5	chr15:92395600-92398400	Active TSS	Left Ventricle	heart
6	chr15:92395600-92398400	Active TSS	NHLF	lung
7	chr15:92395600-92398600	Active TSS	Aorta	Aorta
8	chr15:92395800-92397200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:92395800-92397400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:92395800-92397600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr15:92395800-92397600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:92395800-92397600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:92395800-92397600	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr15:92395800-92397800	Active TSS	Psoas Muscle	Psoas
15	chr15:92395800-92398000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:92395800-92398000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr15:92395800-92398000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:92395800-92398800	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr15:92396000-92397200	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:92396000-92397200	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr15:92396000-92397400	Active TSS	H1 Cell Line	embryonic stem cell
22	chr15:92396000-92397400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:92396000-92397400	Bivalent/Poised TSS	HepG2	liver
24	chr15:92396000-92397600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:92396000-92397600	Active TSS	Primary monocytes fromperipheralblood	blood
26	chr15:92396000-92397600	Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr15:92396000-92397600	Active TSS	Osteobl	bone
28	chr15:92396000-92397800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:92396000-92397800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr15:92396000-92397800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:92396000-92397800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:92396000-92397800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:92396000-92397800	Active TSS	Muscle Satellite Cultured Cells	--
34	chr15:92396000-92397800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:92396000-92397800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:92396000-92397800	Active TSS	Colon Smooth Muscle	Colon
37	chr15:92396000-92397800	Active TSS	Hela-S3	cervix
38	chr15:92396000-92397800	Active TSS	Monocytes-CD14+_RO01746	blood
39	chr15:92396000-92397800	Active TSS	NHEK	skin
40	chr15:92396000-92398000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:92396000-92398000	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr15:92396000-92398000	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr15:92396000-92398000	Active TSS	A549	lung
44	chr15:92396000-92398000	Active TSS	HSMM	muscle
45	chr15:92396000-92398200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:92396000-92398200	Active TSS	Esophagus	oesophagus
47	chr15:92396000-92398200	Active TSS	Spleen	Spleen
48	chr15:92396000-92398200	Active TSS	NHDF-Ad	bronchial
49	chr15:92396000-92398400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:92396000-92398400	Active TSS	Breast Myoepithelial Primary Cells	Breast

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