Variant report

Variant	rs57152360
Chromosome Location	chr5:90895892-90895893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12108929	0.88[AFR][1000 genomes]
rs9968659	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034732	chr5:90834465-90925707	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90894800-90896200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:90895000-90896600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:90895000-90896800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:90895200-90896000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:90895600-90896600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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