Variant report

Variant	rs571535192
Chromosome Location	chr19:37743584-37743585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr19:37741979-37743794	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000226686	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv9717	chr19:37721760-37796698	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv960834	chr19:37742831-37749967	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37710400-37744200	ZNF genes & repeats	Liver	Liver
2	chr19:37725000-37743600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37741200-37743800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr19:37741200-37744000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37741200-37745600	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37741400-37743600	Active TSS	Right Atrium	heart
7	chr19:37741400-37743800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr19:37741400-37743800	Active TSS	Brain Substantia Nigra	brain
9	chr19:37741400-37743800	Active TSS	Fetal Kidney	kidney
10	chr19:37741600-37743600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr19:37741600-37743600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr19:37741600-37743600	ZNF genes & repeats	HSMMtube	muscle
13	chr19:37741600-37749200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:37741800-37743600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:37741800-37743600	Active TSS	NHDF-Ad	bronchial
16	chr19:37741800-37744000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:37742000-37743600	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr19:37742000-37743600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr19:37742000-37743600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr19:37742000-37743600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr19:37742000-37743600	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr19:37742000-37743600	ZNF genes & repeats	HMEC	breast
23	chr19:37742000-37743600	Active TSS	NH-A	brain
24	chr19:37742000-37743600	Active TSS	NHLF	lung
25	chr19:37742000-37743600	Active TSS	Osteobl	bone
26	chr19:37742000-37743800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:37742000-37743800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:37742000-37743800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:37742000-37743800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:37742000-37743800	Active TSS	Muscle Satellite Cultured Cells	--
31	chr19:37742000-37743800	Active TSS	Colon Smooth Muscle	Colon
32	chr19:37742000-37743800	Active TSS	Rectal Smooth Muscle	rectum
33	chr19:37742000-37743800	ZNF genes & repeats	NHEK	skin
34	chr19:37742000-37744000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr19:37742000-37744000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
36	chr19:37742200-37743600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr19:37742200-37743600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr19:37742200-37743600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr19:37742200-37743600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr19:37742200-37743600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr19:37742200-37743600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr19:37742200-37743600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr19:37742200-37743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr19:37742200-37743600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:37742200-37743600	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr19:37742200-37743600	Active TSS	Left Ventricle	heart
47	chr19:37742200-37743600	Active TSS	Psoas Muscle	Psoas
48	chr19:37742200-37744000	ZNF genes & repeats	Placenta	Placenta
49	chr19:37742200-37744200	ZNF genes & repeats	Lung	lung
50	chr19:37742600-37743600	Active TSS	Ovary	ovary

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