Variant report

Variant	rs571560276
Chromosome Location	chr5:36446240-36446241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36415500..36419149-chr5:36442914..36446558,5	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36439200-36446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:36439800-36446400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:36441600-36446600	Enhancers	Placenta	Placenta
4	chr5:36443800-36446600	Enhancers	Brain Anterior Caudate	brain
5	chr5:36444400-36451800	Weak transcription	Fetal Kidney	kidney
6	chr5:36445000-36450400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:36445000-36451000	Weak transcription	HSMMtube	muscle
8	chr5:36445200-36450200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:36445400-36448000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:36445400-36448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:36445400-36449200	Weak transcription	HMEC	breast
12	chr5:36445400-36450400	Weak transcription	HSMM	muscle
13	chr5:36445400-36450400	Weak transcription	NH-A	brain
14	chr5:36445600-36447800	Weak transcription	NHEK	skin
15	chr5:36445600-36448200	Weak transcription	Stomach Mucosa	stomach
16	chr5:36445600-36449200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:36445600-36449800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:36445600-36450200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:36445600-36450400	Weak transcription	Osteobl	bone
20	chr5:36445800-36450600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:36445800-36452400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:36445800-36462800	Weak transcription	Esophagus	oesophagus
23	chr5:36446000-36446400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:36446000-36447800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links