Variant report

Variant	rs571581321
Chromosome Location	chr2:148641197-148641198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:148631936..148634646-chr2:148640576..148642196,2	K562	blood:
2	chr2:148633010..148635372-chr2:148639635..148642238,3	K562	blood:

Variant related genes	Relation type
ENSG00000212389	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875275	chr2:148166428-148711242	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3392562	chr2:148476961-148843061	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3405592	chr2:148641025-148650069	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148621600-148641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:148623600-148642600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:148634600-148641200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:148634600-148641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:148634600-148641800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:148634600-148642400	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:148634600-148642800	Weak transcription	Ovary	ovary
8	chr2:148634600-148668200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:148635200-148641800	Weak transcription	Liver	Liver
10	chr2:148635600-148645800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:148637200-148641800	Weak transcription	HepG2	liver
12	chr2:148637200-148752600	Weak transcription	Small Intestine	intestine
13	chr2:148637400-148654800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:148638800-148641400	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:148638800-148641400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:148638800-148642200	Weak transcription	Psoas Muscle	Psoas
17	chr2:148638800-148645200	Weak transcription	Fetal Intestine Small	intestine
18	chr2:148639000-148641400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:148639000-148641600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:148639000-148654800	Weak transcription	Fetal Intestine Large	intestine
21	chr2:148639200-148641800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr2:148639600-148641600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr2:148639800-148641400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr2:148639800-148641400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:148639800-148641800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr2:148639800-148646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:148640000-148641800	Enhancers	Adipose Nuclei	Adipose
28	chr2:148640000-148642800	Enhancers	Fetal Lung	lung
29	chr2:148640200-148644400	Weak transcription	Right Atrium	heart
30	chr2:148640200-148644600	Weak transcription	Fetal Heart	heart
31	chr2:148640400-148641800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:148640400-148642000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr2:148640400-148642200	Weak transcription	Brain Germinal Matrix	brain
34	chr2:148640600-148641800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:148640600-148642200	Weak transcription	Stomach Mucosa	stomach
36	chr2:148641000-148642800	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr2:148641000-148644400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links