Variant report

Variant	rs571597645
Chromosome Location	chr7:4807566-4807567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:4799859..4801528-chr7:4805403..4807686,2	K562	blood:
2	chr7:4806041..4807577-chr7:4809282..4811318,2	MCF-7	breast:
3	chr7:4796456..4799224-chr7:4806588..4809461,2	MCF-7	breast:
4	chr7:4802110..4804646-chr7:4807009..4808725,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RADIL-1	chr7:4807257-4807749	ENSG00000251104

Variant related genes	Relation type
ENSG00000164916	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv887377	chr7:4730535-4862259	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv887379	chr7:4749527-4828593	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv887380	chr7:4760124-4929721	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv471293	chr7:4764861-4885221	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv887381	chr7:4769030-4880954	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv823994	chr7:4792385-4928328	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv887382	chr7:4792762-4880954	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv8033	chr7:4802287-5086597	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv2380266	chr7:4807542-4808254	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4785200-4814200	Weak transcription	Fetal Brain Male	brain
2	chr7:4785600-4814400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:4786400-4808400	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:4786600-4809000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:4787000-4807600	Strong transcription	Dnd41	blood
6	chr7:4787600-4812400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:4788200-4808200	Weak transcription	Fetal Heart	heart
8	chr7:4788200-4812400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:4788400-4808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:4788400-4813800	Weak transcription	Right Atrium	heart
11	chr7:4789600-4814400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:4791200-4808000	Strong transcription	Fetal Muscle Leg	muscle
13	chr7:4791800-4809000	Strong transcription	NHLF	lung
14	chr7:4792000-4808200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:4792400-4807600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:4793200-4808800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:4793400-4807600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:4793600-4807600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr7:4793600-4807800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr7:4793800-4809000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:4794000-4807600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:4794000-4807600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:4794000-4807600	Strong transcription	Brain Cingulate Gyrus	brain
24	chr7:4794000-4807600	Strong transcription	Placenta	Placenta
25	chr7:4794000-4807800	Strong transcription	Brain Hippocampus Middle	brain
26	chr7:4794000-4808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:4794000-4808600	Strong transcription	Fetal Brain Female	brain
28	chr7:4794000-4809000	Strong transcription	Liver	Liver
29	chr7:4794200-4807600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:4794200-4807600	Strong transcription	Adipose Nuclei	Adipose
31	chr7:4794200-4807600	Strong transcription	Brain Angular Gyrus	brain
32	chr7:4794200-4809000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:4794200-4814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:4794400-4808200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:4794400-4808600	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr7:4795200-4807800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:4795200-4808600	Strong transcription	Thymus	Thymus
38	chr7:4796600-4814000	Weak transcription	Fetal Kidney	kidney
39	chr7:4798400-4814000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:4798600-4808000	Weak transcription	HSMM	muscle
41	chr7:4798600-4814000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr7:4799400-4809200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:4800000-4813800	Weak transcription	Primary B cells from cord blood	blood
44	chr7:4800200-4808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:4800200-4813800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr7:4801000-4814200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr7:4801600-4814400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:4802600-4807800	Strong transcription	Esophagus	oesophagus
49	chr7:4802600-4814200	Weak transcription	Psoas Muscle	Psoas
50	chr7:4802800-4807600	Strong transcription	NHEK	skin

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