Variant report

Variant	rs571601448
Chromosome Location	chr5:154175511-154175512
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3445582	chr5:154174659-154176907	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3371276	chr5:154175059-154176407	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154164200-154176400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154164600-154188200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:154166000-154176000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154167000-154203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:154169200-154204200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:154169200-154204200	Strong transcription	Dnd41	blood
7	chr5:154169400-154176400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:154169400-154176400	Strong transcription	Colonic Mucosa	Colon
9	chr5:154169400-154176400	Strong transcription	Fetal Lung	lung
10	chr5:154169400-154176600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:154169400-154176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:154169400-154177000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:154169400-154178800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:154169400-154179200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr5:154169400-154186200	Strong transcription	Fetal Stomach	stomach
16	chr5:154169400-154188400	Strong transcription	NHEK	skin
17	chr5:154169400-154190400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr5:154169400-154191000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:154169400-154191200	Strong transcription	Primary T cells from cord blood	blood
20	chr5:154169400-154191200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:154169400-154191400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:154169400-154192600	Strong transcription	Fetal Thymus	thymus
23	chr5:154169400-154194800	Strong transcription	K562	blood
24	chr5:154169400-154198200	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr5:154169400-154198400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:154169400-154198800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:154169400-154199000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:154169400-154199400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr5:154169400-154200000	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:154169400-154200800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr5:154169400-154201400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:154169400-154204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:154169400-154204200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:154169400-154204200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr5:154169400-154205800	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr5:154169600-154176600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr5:154169600-154178800	Weak transcription	Small Intestine	intestine
38	chr5:154169600-154179000	Strong transcription	HepG2	liver
39	chr5:154169600-154185800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:154169600-154185800	Strong transcription	Thymus	Thymus
41	chr5:154169600-154188400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr5:154169600-154188600	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:154169600-154189200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr5:154169600-154191200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr5:154169600-154191600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr5:154169600-154192400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:154169600-154196400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:154169600-154199400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:154169600-154200000	Strong transcription	Fetal Muscle Leg	muscle
50	chr5:154169600-154202400	Strong transcription	Rectal Mucosa Donor 31	rectum

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