Variant report

Variant	rs571603048
Chromosome Location	chr15:72100227-72100228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr15:72099456-72100513	H1-hESC	embryonic stem cell:	n/a	chr15:72099559-72099577 chr15:72099677-72099687
2	TBP	chr15:72099605-72100413	H1-hESC	embryonic stem cell:	n/a	n/a
3	MYC	chr15:72100214-72100227	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTBP2	chr15:72099434-72100412	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr15:72099774-72100300	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr15:72099437-72100245	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZNF263	chr15:72100158-72100640	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:72095402..72097708-chr15:72097755..72100613,2	MCF-7	breast:
2	chr15:72097461..72102477-chr15:72104726..72109263,4	MCF-7	breast:
3	chr15:72093317..72095057-chr15:72097968..72100782,2	MCF-7	breast:

Variant related genes	Relation type
NR2E3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72096000-72100600	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:72096000-72105600	Enhancers	Fetal Muscle Leg	muscle
3	chr15:72096200-72100400	Enhancers	Fetal Heart	heart
4	chr15:72096200-72103400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:72097200-72100600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:72098400-72100600	Enhancers	Fetal Lung	lung
7	chr15:72098400-72100600	Enhancers	A549	lung
8	chr15:72098400-72100800	Enhancers	Placenta	Placenta
9	chr15:72098600-72100400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:72098600-72100400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:72098600-72100400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:72098600-72100400	Enhancers	Fetal Stomach	stomach
13	chr15:72098600-72100400	Enhancers	Left Ventricle	heart
14	chr15:72098600-72100400	Enhancers	HMEC	breast
15	chr15:72098600-72100400	Enhancers	HUVEC	blood vessel
16	chr15:72098600-72100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72098600-72100600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:72098600-72100600	Enhancers	NH-A	brain
19	chr15:72098600-72100600	Enhancers	NHLF	lung
20	chr15:72098600-72100600	Enhancers	Osteobl	bone
21	chr15:72098600-72100800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:72098600-72100800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr15:72098600-72101400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr15:72098600-72104000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:72098800-72100400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:72098800-72100400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:72098800-72100600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr15:72098800-72100800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:72098800-72101000	Enhancers	HSMM	muscle
30	chr15:72098800-72101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:72098800-72101400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:72099000-72100400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr15:72099000-72100800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:72099000-72100800	Enhancers	HSMMtube	muscle
35	chr15:72099000-72101000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:72099000-72101200	Enhancers	Right Atrium	heart
37	chr15:72099200-72102600	Weak transcription	Fetal Intestine Large	intestine
38	chr15:72099400-72100600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr15:72099400-72100600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr15:72099400-72100600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:72099400-72100600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:72099400-72100600	Enhancers	Spleen	Spleen
43	chr15:72099400-72101000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr15:72100000-72100600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:72100000-72100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:72100000-72101000	Weak transcription	Brain Germinal Matrix	brain
47	chr15:72100000-72103400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:72100200-72100400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr15:72100200-72100400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr15:72100200-72100400	Flanking Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links