Variant report

Variant	rs57160562
Chromosome Location	chr1:210065469-210065470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11801400	0.87[AMR][1000 genomes]
rs2018942	0.87[AMR][1000 genomes]
rs56271040	0.87[AMR][1000 genomes]
rs7530907	0.87[AMR][1000 genomes]
rs7531737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7539219	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210060400-210066800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:210060600-210068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210062400-210066400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210063200-210065600	Enhancers	HMEC	breast
5	chr1:210063200-210065800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:210064200-210066800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:210064400-210068200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:210064400-210068800	Weak transcription	HSMM	muscle
9	chr1:210064600-210068200	Weak transcription	HUVEC	blood vessel
10	chr1:210064800-210066200	Weak transcription	Hela-S3	cervix
11	chr1:210065200-210066800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:210065200-210067000	Weak transcription	NHDF-Ad	bronchial
13	chr1:210065200-210068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:210065200-210068000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:210065200-210068000	Weak transcription	NH-A	brain
16	chr1:210065200-210068200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:210065200-210068200	Weak transcription	Osteobl	bone
18	chr1:210065400-210066600	Weak transcription	NHEK	skin
19	chr1:210065400-210066800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:210065400-210066800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:210065400-210068000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links