Variant report

Variant	rs57164928
Chromosome Location	chr21:40956213-40956214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11088483	0.86[ASN][1000 genomes]
rs11088486	0.87[ASN][1000 genomes]
rs13046702	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2837076	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2949652	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474852	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs477483	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479578	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs480188	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs480386	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs482389	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs485757	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs490214	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494815	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs516184	0.86[ASN][1000 genomes]
rs547024	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs551558	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs551699	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs559642	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs559696	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs560554	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561340	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs565101	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs591457	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs592738	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs592842	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs594005	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs594682	0.83[ASN][1000 genomes]
rs608265	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs622712	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623605	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623994	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624037	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624436	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624900	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs625760	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs626887	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs636776	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs639082	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs639970	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs651686	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs651740	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs651768	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs652138	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs653579	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs657250	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669968	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685238	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685732	0.86[ASN][1000 genomes]
rs686185	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs686540	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs686542	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs687031	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs687537	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs687940	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs689362	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9974618	0.87[ASN][1000 genomes]
rs9974702	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9981021	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9984946	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2756754	chr21:40857523-40966156	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2758820	chr21:40857523-40966156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv34779	chr21:40884871-40977473	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv433457	chr21:40900348-40964553	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	esv17842	chr21:40918970-40965975	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3339127	chr21:40954707-40957255	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3373662	chr21:40955032-40957030	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3338536	chr21:40955532-40956580	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40948800-40959800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr21:40949400-40959000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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