Variant report

Variant	rs571664975
Chromosome Location	chr16:12414420-12414421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:12407586..12410005-chr16:12412153..12414940,2	K562	blood:
2	chr16:12405145..12407568-chr16:12414371..12416056,2	MCF-7	breast:
3	chr16:12412998..12415794-chr16:12417822..12420522,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv905349	chr16:12408750-12445863	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv827555	chr16:12413244-12429978	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12359800-12418000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr16:12371400-12456800	Weak transcription	Aorta	Aorta
3	chr16:12374200-12417200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr16:12395600-12417200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr16:12396000-12414800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr16:12396800-12416400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr16:12404000-12414800	Weak transcription	Thymus	Thymus
8	chr16:12404200-12427400	Weak transcription	Primary T cells from cord blood	blood
9	chr16:12405600-12426400	Weak transcription	Lung	lung
10	chr16:12405600-12442400	Weak transcription	Spleen	Spleen
11	chr16:12405800-12417800	Weak transcription	Adipose Nuclei	Adipose
12	chr16:12408800-12417200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr16:12409400-12417400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:12409400-12417600	Weak transcription	Fetal Intestine Small	intestine
15	chr16:12409400-12417800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr16:12410000-12456600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:12410200-12424400	Weak transcription	Right Atrium	heart
18	chr16:12410200-12464800	Weak transcription	Gastric	stomach
19	chr16:12410600-12415000	Weak transcription	Pancreas	Pancrea
20	chr16:12410800-12414800	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr16:12410800-12414800	Weak transcription	Stomach Mucosa	stomach
22	chr16:12411600-12416000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:12412000-12414800	Weak transcription	Esophagus	oesophagus
24	chr16:12412200-12416000	Enhancers	HepG2	liver
25	chr16:12412400-12415200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr16:12412800-12417000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr16:12413000-12415200	Enhancers	NH-A	brain
28	chr16:12413200-12414600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr16:12413200-12414600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr16:12413200-12415600	Enhancers	Right Ventricle	heart
31	chr16:12413400-12414600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr16:12413400-12414600	Enhancers	Fetal Stomach	stomach
33	chr16:12413400-12414800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr16:12413400-12415000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr16:12413400-12415000	Enhancers	Osteobl	bone
36	chr16:12413600-12414600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr16:12413600-12415200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr16:12413800-12415800	Enhancers	Left Ventricle	heart
39	chr16:12413800-12418000	Weak transcription	NHEK	skin
40	chr16:12414000-12414600	Enhancers	HUVEC	blood vessel
41	chr16:12414000-12414600	Enhancers	NHDF-Ad	bronchial
42	chr16:12414000-12415200	Enhancers	GM12878-XiMat	blood
43	chr16:12414200-12414800	Genic enhancers	Primary B cells from cord blood	blood
44	chr16:12414200-12415200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:12414200-12415600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr16:12414200-12417400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr16:12414400-12414800	Flanking Active TSS	Fetal Heart	heart
48	chr16:12414400-12414800	Enhancers	Fetal Kidney	kidney
49	chr16:12414400-12415000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:12414400-12416600	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links