Variant report

Variant	rs57169030
Chromosome Location	chr14:66058838-66058839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17102621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58621349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60007350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:66039800-66061200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:66041000-66059000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:66041000-66060800	Weak transcription	Dnd41	blood
7	chr14:66041200-66060800	Weak transcription	GM12878-XiMat	blood
8	chr14:66041200-66061000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:66043800-66061000	Weak transcription	Fetal Intestine Small	intestine
10	chr14:66049800-66060800	Weak transcription	Primary B cells from cord blood	blood
11	chr14:66052400-66061000	Weak transcription	Stomach Mucosa	stomach
12	chr14:66055200-66061000	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:66055400-66060600	Weak transcription	HepG2	liver
14	chr14:66055400-66060800	Weak transcription	Liver	Liver
15	chr14:66056000-66060800	Weak transcription	Brain Substantia Nigra	brain
16	chr14:66056000-66061000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:66057400-66059600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:66057400-66059600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:66057800-66059200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr14:66058200-66079000	Weak transcription	Primary T cells from cord blood	blood
21	chr14:66058400-66059400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:66058400-66060600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:66058400-66061000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr14:66058600-66059000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:66058600-66060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:66058600-66060800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:66058600-66070600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:66058800-66059200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr14:66058800-66060600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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