Variant report

Variant	rs57170199
Chromosome Location	chr7:85260580-85260581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57522900	0.87[AFR][1000 genomes]
rs61358265	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379986	0.85[AMR][1000 genomes]
rs73379989	0.85[AMR][1000 genomes]
rs73703911	0.87[AFR][1000 genomes]
rs73703913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703919	0.83[AFR][1000 genomes]
rs73703929	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv888650	chr7:85138665-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758123	chr7:85153322-85318042	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759542	chr7:85153322-85318042	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv831051	chr7:85154948-85321916	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv888652	chr7:85165289-85267174	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv888653	chr7:85165289-85381614	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv888655	chr7:85178080-85566769	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv888657	chr7:85187214-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv888658	chr7:85187214-85300374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv888659	chr7:85187214-85356773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv888660	chr7:85187214-85444989	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv888661	chr7:85187214-85458197	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv888663	chr7:85194414-85267174	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888664	chr7:85194414-85381614	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv888665	chr7:85194414-85582101	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv888666	chr7:85206084-85356773	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv869892	chr7:85218966-85334376	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv888667	chr7:85224664-85356773	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv1023458	chr7:85230414-85275878	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85259800-85260800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:85259800-85260800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:85259800-85260800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:85259800-85260800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:85259800-85261200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:85259800-85261200	Enhancers	HUVEC	blood vessel
7	chr7:85260000-85260800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:85260000-85260800	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:85260000-85261200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:85260200-85260600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:85260200-85260600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:85260200-85260600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:85260200-85260600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr7:85260200-85260600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr7:85260200-85260600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:85260200-85260600	Enhancers	Brain Angular Gyrus	brain
17	chr7:85260200-85260800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:85260200-85260800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:85260200-85260800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:85260200-85260800	Enhancers	Brain Hippocampus Middle	brain
21	chr7:85260200-85260800	Enhancers	Brain Substantia Nigra	brain
22	chr7:85260200-85260800	Flanking Active TSS	A549	lung
23	chr7:85260200-85261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:85260400-85260600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr7:85260400-85260800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:85260400-85260800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:85260400-85260800	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr7:85260400-85260800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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