Variant report

Variant	rs571702944
Chromosome Location	chr5:177357979-177357980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv883184	chr5:177311043-177488281	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv968281	chr5:177317594-177358347	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv883185	chr5:177357964-177401509	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177356800-177358000	Enhancers	Pancreas	Pancrea
2	chr5:177356800-177358800	Enhancers	Ovary	ovary
3	chr5:177357000-177358000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:177357000-177358000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:177357000-177358000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:177357000-177358000	Enhancers	Liver	Liver
7	chr5:177357000-177358000	Enhancers	Fetal Heart	heart
8	chr5:177357000-177358200	Enhancers	Fetal Muscle Trunk	muscle
9	chr5:177357200-177358000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:177357200-177358000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:177357200-177358000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:177357200-177358000	Enhancers	Stomach Mucosa	stomach
13	chr5:177357400-177358000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:177357400-177358000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr5:177357400-177365400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:177357800-177358200	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr5:177357800-177365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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