Variant report

Variant	rs571712221
Chromosome Location	chr9:101469674-101469675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101298822..101299808-chr9:101469168..101470098,4	K562	blood:
2	chr9:101469417..101470003-chr9:101537901..101538481,2	K562	blood:
3	chr9:101455554..101459399-chr9:101467510..101471263,4	MCF-7	breast:
4	chr9:100836437..100837120-chr9:101469356..101469982,2	K562	blood:
5	chr9:100967716..100968659-chr9:101469208..101469729,2	K562	blood:
6	chr9:101462868..101464769-chr9:101469228..101471376,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv893616	chr9:101371017-101472921	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv825007	chr9:101467848-101476292	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3338088	chr9:101469131-101473529	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv819653	chr9:101469511-101472192	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101468800-101469800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr9:101468800-101469800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr9:101469000-101469800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
4	chr9:101469000-101469800	Bivalent Enhancer	Fetal Stomach	stomach
5	chr9:101469000-101469800	Bivalent Enhancer	Ovary	ovary
6	chr9:101469000-101469800	Bivalent Enhancer	NHDF-Ad	bronchial
7	chr9:101469000-101470000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr9:101469000-101470000	Bivalent Enhancer	Spleen	Spleen
9	chr9:101469000-101470600	Flanking Active TSS	HUVEC	blood vessel
10	chr9:101469000-101470800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr9:101469000-101471000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:101469000-101471000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:101469000-101471800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
14	chr9:101469200-101469800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:101469200-101469800	Bivalent Enhancer	HSMMtube	muscle
16	chr9:101469200-101470200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:101469200-101470200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:101469200-101470200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:101469200-101470200	Bivalent/Poised TSS	NHLF	lung
20	chr9:101469200-101470400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:101469200-101470400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
22	chr9:101469200-101470400	Bivalent Enhancer	Left Ventricle	heart
23	chr9:101469200-101470800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
24	chr9:101469200-101470800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
25	chr9:101469200-101470800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
26	chr9:101469200-101470800	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr9:101469200-101470800	Bivalent Enhancer	Placenta	Placenta
28	chr9:101469200-101470800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr9:101469200-101471000	Bivalent Enhancer	HMEC	breast
30	chr9:101469200-101471800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr9:101469200-101471800	Enhancers	Liver	Liver
32	chr9:101469200-101472000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr9:101469200-101472000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr9:101469200-101472000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr9:101469200-101472000	Active TSS	Brain Angular Gyrus	brain
36	chr9:101469200-101472200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr9:101469400-101469800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:101469400-101469800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:101469400-101469800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
40	chr9:101469400-101469800	Bivalent Enhancer	Adipose Nuclei	Adipose
41	chr9:101469400-101469800	Bivalent/Poised TSS	Colonic Mucosa	Colon
42	chr9:101469400-101469800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
43	chr9:101469400-101469800	Bivalent Enhancer	Lung	lung
44	chr9:101469400-101469800	Flanking Active TSS	Pancreas	Pancrea
45	chr9:101469400-101470000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:101469400-101470000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr9:101469400-101470000	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr9:101469400-101470000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:101469400-101470000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
50	chr9:101469400-101470000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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