Variant report

Variant	rs57173444
Chromosome Location	chr4:74761404-74761405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74758611..74762453-chr4:74763527..74766152,5	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6446968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6816814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73830329	1.00[ASN][1000 genomes]
rs73830332	1.00[ASN][1000 genomes]
rs73830338	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73830339	1.00[ASN][1000 genomes]
rs73830340	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73830343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73830352	1.00[ASN][1000 genomes]
rs73830354	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73830364	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7699145	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial
2	chr4:74759200-74764600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:74759800-74770400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:74760000-74761600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr4:74760000-74762600	Enhancers	Fetal Intestine Small	intestine
6	chr4:74760200-74767000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:74760400-74761600	Weak transcription	Fetal Kidney	kidney
8	chr4:74760600-74761600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:74760600-74763800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:74760600-74764200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:74760800-74761600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:74760800-74761600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr4:74760800-74762000	Enhancers	Fetal Intestine Large	intestine
14	chr4:74760800-74762600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:74760800-74764000	Enhancers	Osteobl	bone
16	chr4:74761000-74761800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:74761000-74761800	Enhancers	Stomach Mucosa	stomach
18	chr4:74761200-74762000	Enhancers	Duodenum Mucosa	Duodenum
19	chr4:74761200-74766600	Weak transcription	K562	blood
20	chr4:74761200-74767400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:74761200-74768600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:74761400-74762600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:74761400-74762600	Weak transcription	NHLF	lung
24	chr4:74761400-74763000	Weak transcription	Adipose Nuclei	Adipose

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