Variant report

Variant	rs571738182
Chromosome Location	chr10:98590279-98590280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:98590172-98590774	HCT-116	colon:	n/a	chr10:98590477-98590490
2	CTCF	chr10:98590211-98590648	MCF-7	breast:	n/a	chr10:98590477-98590490
3	MXI1	chr10:98590242-98590509	K562	blood:	n/a	n/a
4	BCLAF1	chr10:98590196-98590741	GM12878	blood:	n/a	chr10:98590416-98590425
5	RAD21	chr10:98590270-98590665	HepG2	liver:	n/a	n/a
6	RFX5	chr10:98590215-98590631	H1-hESC	embryonic stem cell:	n/a	n/a
7	RCOR1	chr10:98590266-98590946	K562	blood:	n/a	n/a
8	CTCF	chr10:98590266-98590631	A549	lung:	n/a	chr10:98590477-98590490
9	RAD21	chr10:98590242-98590647	GM12878	blood:	n/a	n/a
10	SMC3	chr10:98589938-98590749	SK-N-SH	brain:	n/a	n/a
11	CTCF	chr10:98590225-98590685	T-47D	breast:	n/a	chr10:98590477-98590490
12	EP300	chr10:98589861-98590799	K562	blood:	n/a	chr10:98590495-98590504
13	RAD21	chr10:98590212-98590691	MCF-7	breast:	n/a	n/a
14	CTCF	chr10:98590279-98590644	K562	blood:	n/a	chr10:98590477-98590490
15	CUX1	chr10:98589970-98590619	K562	blood:	n/a	n/a
16	RAD21	chr10:98590163-98590732	A549	lung:	n/a	n/a
17	POLR2A	chr10:98590223-98590690	MCF10A-Er-Src	breast:	n/a	n/a
18	CTCF	chr10:98590151-98590919	SK-N-SH	brain:	n/a	chr10:98590851-98590864 chr10:98590477-98590490
19	CTCF	chr10:98589953-98591136	A549	lung:	n/a	chr10:98590851-98590864 chr10:98590477-98590490
20	CTCF	chr10:98590180-98590330	HEK293	kidney:	n/a	n/a
21	RAD21	chr10:98590083-98590770	HCT-116	colon:	n/a	n/a
22	RAD21	chr10:98590259-98590725	IMR90	lung:	n/a	n/a
23	CTCF	chr10:98590167-98590680	A549	lung:	n/a	chr10:98590477-98590490
24	MYC	chr10:98590208-98590623	MCF10A-Er-Src	breast:	n/a	n/a
25	RAD21	chr10:98590276-98590691	MCF-7	breast:	n/a	n/a
26	TBL1XR1	chr10:98590152-98590697	GM12878	blood:	n/a	n/a
27	RAD21	chr10:98590070-98590803	HCT-116	colon:	n/a	n/a
28	RAD21	chr10:98590168-98590786	A549	lung:	n/a	n/a
29	RAD21	chr10:98590246-98590746	ECC-1	luminal epithelium:	n/a	n/a
30	CTCF	chr10:98590236-98590681	IMR90	lung:	n/a	chr10:98590477-98590490
31	MXI1	chr10:98590104-98590643	GM12878	blood:	n/a	n/a
32	CUX1	chr10:98590219-98590486	GM12878	blood:	n/a	n/a
33	RAD21	chr10:98590278-98590648	A549	lung:	n/a	n/a
34	RAD21	chr10:98590244-98590738	ECC-1	luminal epithelium:	n/a	n/a
35	CTCF	chr10:98590254-98590697	GM12878	blood:	n/a	chr10:98590477-98590490
36	SMC3	chr10:98590233-98590829	GM12878	blood:	n/a	n/a
37	E2F4	chr10:98590073-98590548	MCF10A-Er-Src	breast:	n/a	n/a
38	MAFF	chr10:98590276-98590464	K562	blood:	n/a	n/a
39	RAD21	chr10:98590267-98590708	H1-hESC	embryonic stem cell:	n/a	n/a
40	GATA1	chr10:98588622-98590740	PBDE	blood:	n/a	chr10:98588976-98588988
41	RAD21	chr10:98590161-98590757	HepG2	liver:	n/a	n/a
42	CTCF	chr10:98590188-98590793	MCF-7	breast:	n/a	chr10:98590477-98590490
43	CTCF	chr10:98590212-98590609	HepG2	liver:	n/a	chr10:98590477-98590490
44	GTF2F1	chr10:98590206-98590591	H1-hESC	embryonic stem cell:	n/a	n/a
45	RUNX3	chr10:98590230-98590711	GM12878	blood:	n/a	n/a
46	CTCF	chr10:98590243-98590718	K562	blood:	n/a	chr10:98590477-98590490
47	CTCF	chr10:98590258-98590672	H1-hESC	embryonic stem cell:	n/a	chr10:98590477-98590490
48	CTCF	chr10:98590068-98590855	HCT-116	colon:	n/a	chr10:98590477-98590490
49	RAD21	chr10:98590120-98590786	SK-N-SH	brain:	n/a	n/a
50	RAD21	chr10:98590205-98590690	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:98524912..98526111-chr10:98589792..98591303,11	MCF-7	breast:
2	chr10:98402475..98403373-chr10:98589917..98590679,3	MCF-7	breast:
3	chr10:98549134..98550000-chr10:98589983..98590943,3	K562	blood:
4	chr10:98588526..98590444-chr10:98592117..98594559,3	K562	blood:
5	chr10:98525204..98525891-chr10:98589963..98590854,2	K562	blood:
6	chr10:98584665..98586917-chr10:98589906..98591474,2	K562	blood:
7	chr10:98523538..98526378-chr10:98589191..98591883,2	MCF-7	breast:

Variant related genes	Relation type
MIR607	TF binding region
LCOR	TF binding region
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3427855	chr10:98590262-98594060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98586800-98590400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:98587200-98591400	Weak transcription	Left Ventricle	heart
3	chr10:98588200-98591000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:98589000-98591000	Enhancers	HepG2	liver
5	chr10:98589200-98590400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:98589200-98591000	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:98589200-98591000	Weak transcription	HSMMtube	muscle
8	chr10:98589200-98591200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:98589800-98591000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:98589800-98591000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:98590000-98590400	Flanking Active TSS	K562	blood
12	chr10:98590000-98590800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:98590000-98591000	Enhancers	Primary B cells from cord blood	blood
14	chr10:98590000-98591000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:98590000-98591000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:98590000-98591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:98590000-98591000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:98590000-98591000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:98590000-98591000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr10:98590000-98591000	Enhancers	A549	lung
21	chr10:98590000-98591000	Enhancers	Osteobl	bone
22	chr10:98590000-98591200	Enhancers	Primary T cells from cord blood	blood
23	chr10:98590000-98591200	Enhancers	Primary hematopoietic stem cells	blood
24	chr10:98590000-98591200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr10:98590000-98591200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:98590000-98591200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:98590000-98591200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr10:98590000-98591400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:98590000-98591400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:98590000-98591400	Enhancers	Small Intestine	intestine
31	chr10:98590000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:98590000-98591600	Enhancers	Stomach Mucosa	stomach
33	chr10:98590200-98590400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:98590200-98590400	Active TSS	Liver	Liver
35	chr10:98590200-98590400	Enhancers	Fetal Kidney	kidney
36	chr10:98590200-98590400	Flanking Active TSS	GM12878-XiMat	blood
37	chr10:98590200-98590600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:98590200-98590600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:98590200-98590600	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr10:98590200-98590800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:98590200-98590800	Enhancers	NHDF-Ad	bronchial
42	chr10:98590200-98591000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr10:98590200-98591000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:98590200-98591000	Enhancers	HMEC	breast
45	chr10:98590200-98591000	Enhancers	NHEK	skin
46	chr10:98590200-98591200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:98590200-98591200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr10:98590200-98591200	Enhancers	Colon Smooth Muscle	Colon
49	chr10:98590200-98591200	Enhancers	Fetal Intestine Small	intestine
50	chr10:98590200-98594600	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links