Variant report

Variant	rs571772174
Chromosome Location	chr15:59033184-59033185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59030373..59033312-chr15:59035023..59037730,3	MCF-7	breast:
2	chr15:59033181..59035462-chr15:59039185..59042530,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:59009800-59035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:59016800-59034200	Weak transcription	Brain Germinal Matrix	brain
4	chr15:59017200-59034400	Weak transcription	Fetal Kidney	kidney
5	chr15:59022200-59040200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:59022600-59034800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:59022600-59038600	Weak transcription	Fetal Brain Female	brain
8	chr15:59023600-59040000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr15:59024000-59038200	Weak transcription	Fetal Stomach	stomach
10	chr15:59024200-59034600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:59024400-59035200	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:59024600-59033200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:59024600-59034400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:59025600-59035200	Weak transcription	Psoas Muscle	Psoas
15	chr15:59025600-59038200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:59025600-59038200	Weak transcription	Gastric	stomach
17	chr15:59025600-59040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:59025800-59033600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:59025800-59034400	Weak transcription	HSMMtube	muscle
20	chr15:59025800-59034600	Weak transcription	Thymus	Thymus
21	chr15:59025800-59034600	Weak transcription	Spleen	Spleen
22	chr15:59025800-59034800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:59026800-59039600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:59027000-59035000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:59027000-59035200	Enhancers	Primary T cells from cord blood	blood
26	chr15:59027000-59039800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr15:59027200-59035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:59027400-59034800	Weak transcription	Right Atrium	heart
29	chr15:59027600-59034000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:59027600-59037800	Weak transcription	Fetal Intestine Small	intestine
31	chr15:59027600-59038000	Weak transcription	Fetal Intestine Large	intestine
32	chr15:59027600-59040200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:59027800-59033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:59029600-59034800	Enhancers	HepG2	liver
35	chr15:59030000-59033800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:59030000-59034000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:59030400-59034400	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:59030600-59033200	Weak transcription	GM12878-XiMat	blood
39	chr15:59030600-59033600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:59030600-59037800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:59030800-59033400	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:59030800-59033400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr15:59030800-59034000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:59030800-59034000	Weak transcription	NH-A	brain
45	chr15:59030800-59034600	Weak transcription	Fetal Heart	heart
46	chr15:59030800-59037800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:59030800-59038200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:59030800-59038400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:59030800-59039400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr15:59031000-59033600	Weak transcription	A549	lung

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