Variant report

Variant	rs571798753
Chromosome Location	chr7:96648440-96648441
allele	-/AGAGAGAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3337466	chr7:96647166-96649364	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96645200-96651600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:96647000-96650200	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
4	chr7:96647600-96650200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
5	chr7:96647600-96650400	Weak transcription	Pancreas	Pancrea
6	chr7:96647800-96648600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:96647800-96648600	Active TSS	Osteobl	bone
8	chr7:96647800-96649000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:96648000-96648800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:96648400-96648600	Bivalent/Poised TSS	Fetal Brain Male	brain
12	chr7:96648400-96648800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr7:96648400-96649200	Bivalent/Poised TSS	Right Atrium	heart
14	chr7:96648400-96649600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:96648400-96652000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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