Variant report

Variant	rs571819934
Chromosome Location	chr9:8660680-8660681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3350587	chr9:8660042-8663346	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3481888	chr9:8660111-8663285	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3481889	chr9:8660111-8663285	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8652800-8660800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:8652800-8664400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:8652800-8669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:8653800-8664800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8658200-8661400	Enhancers	Brain Cingulate Gyrus	brain
6	chr9:8658800-8661000	Enhancers	Brain Substantia Nigra	brain
7	chr9:8658800-8661600	Enhancers	Brain Hippocampus Middle	brain
8	chr9:8659000-8661000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:8659000-8661200	Enhancers	Brain Anterior Caudate	brain
10	chr9:8659800-8662600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:8660000-8660800	Enhancers	Adipose Nuclei	Adipose
12	chr9:8660000-8661000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:8660000-8661000	Enhancers	Colon Smooth Muscle	Colon
14	chr9:8660000-8661400	Enhancers	Liver	Liver
15	chr9:8660000-8661400	Enhancers	Brain Angular Gyrus	brain
16	chr9:8660000-8661400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr9:8660200-8660800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:8660200-8660800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr9:8660200-8661000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:8660200-8661200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:8660200-8661200	Enhancers	Fetal Kidney	kidney
22	chr9:8660200-8661400	Enhancers	Fetal Brain Male	brain
23	chr9:8660200-8661600	Enhancers	Fetal Heart	heart
24	chr9:8660400-8660800	Enhancers	Brain Germinal Matrix	brain
25	chr9:8660400-8660800	Enhancers	Fetal Muscle Leg	muscle
26	chr9:8660400-8660800	Enhancers	Ovary	ovary
27	chr9:8660400-8661000	Enhancers	Aorta	Aorta
28	chr9:8660400-8661000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr9:8660400-8661000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr9:8660400-8661200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:8660400-8661200	Enhancers	Psoas Muscle	Psoas
32	chr9:8660400-8661200	Enhancers	Dnd41	blood
33	chr9:8660400-8661400	Enhancers	Fetal Lung	lung
34	chr9:8660400-8661400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr9:8660600-8660800	Enhancers	Primary hematopoietic stem cells	blood
36	chr9:8660600-8661000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr9:8660600-8661200	Enhancers	NH-A	brain
38	chr9:8660600-8668000	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links