Variant report

Variant	rs571837115
Chromosome Location	chr7:112094393-112094394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:112094361-112094503	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:112094214-112094468	GM12878	blood:	n/a	n/a
3	CTCF	chr7:112094260-112094410	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:112048216..112051136-chr7:112094029..112095591,2	K562	blood:
2	chr7:112088943..112098465-chr7:112111106..112127214,31	K562	blood:
3	chr7:112089375..112094700-chr7:112096975..112100569,9	MCF-7	breast:
4	chr7:111806034..111807822-chr7:112092535..112095230,2	K562	blood:
5	chr7:112058803..112077296-chr7:112087519..112096464,50	MCF-7	breast:

No data

Variant related genes	Relation type
IFRD1	TF binding region
ENSG00000181016	Chromatin interaction
ENSG00000226851	Chromatin interaction
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1030033	chr7:112092709-112140430	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112089800-112094400	Active TSS	Right Ventricle	heart
2	chr7:112089800-112094800	Active TSS	GM12878-XiMat	blood
3	chr7:112090000-112094600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:112091400-112094600	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr7:112091600-112094400	Active TSS	Right Atrium	heart
6	chr7:112091800-112094600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:112092000-112094400	Enhancers	Fetal Heart	heart
8	chr7:112092000-112094600	Enhancers	Small Intestine	intestine
9	chr7:112092400-112094400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr7:112092400-112094600	Enhancers	Fetal Brain Male	brain
11	chr7:112092600-112094400	Weak transcription	Lung	lung
12	chr7:112092600-112094600	Enhancers	Brain Angular Gyrus	brain
13	chr7:112092600-112094600	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:112092600-112095400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:112092600-112095800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:112092600-112095800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:112092600-112095800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:112092600-112095800	Weak transcription	Placenta	Placenta
19	chr7:112092600-112098800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:112092600-112099000	Weak transcription	Spleen	Spleen
21	chr7:112092600-112099800	Weak transcription	Esophagus	oesophagus
22	chr7:112092600-112099800	Weak transcription	Gastric	stomach
23	chr7:112092600-112102400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:112092600-112109800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:112092600-112121800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:112092800-112094400	Enhancers	Brain Substantia Nigra	brain
27	chr7:112092800-112094600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:112092800-112094600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:112092800-112094800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr7:112092800-112095000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:112092800-112095800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:112092800-112097000	Weak transcription	Colonic Mucosa	Colon
33	chr7:112093000-112094400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr7:112093000-112094400	Enhancers	Brain Cingulate Gyrus	brain
35	chr7:112093000-112094400	Enhancers	Fetal Intestine Small	intestine
36	chr7:112093000-112094600	Enhancers	Fetal Intestine Large	intestine
37	chr7:112093000-112094800	Enhancers	Colon Smooth Muscle	Colon
38	chr7:112093000-112094800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr7:112093000-112094800	Enhancers	Rectal Smooth Muscle	rectum
40	chr7:112093000-112095600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:112093000-112095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr7:112093000-112095800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:112093000-112095800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr7:112093000-112095800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:112093000-112095800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr7:112093000-112095800	Weak transcription	Fetal Kidney	kidney
47	chr7:112093000-112095800	Weak transcription	Fetal Thymus	thymus
48	chr7:112093000-112095800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:112093000-112098800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:112093000-112099800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links