Variant report

Variant	rs571840425
Chromosome Location	chr3:141235917-141235918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
2	chr3:141210400-141248000	Weak transcription	NHLF	lung
3	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
5	chr3:141226600-141236200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:141226600-141254400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:141227400-141242800	Weak transcription	Ovary	ovary
8	chr3:141227600-141236200	Weak transcription	Lung	lung
9	chr3:141228400-141246600	Strong transcription	Dnd41	blood
10	chr3:141229000-141236200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:141229200-141236200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:141229400-141267400	Weak transcription	Fetal Heart	heart
13	chr3:141230000-141236400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:141230000-141259800	Weak transcription	Small Intestine	intestine
15	chr3:141230400-141243000	Weak transcription	Spleen	Spleen
16	chr3:141231000-141236200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:141231000-141243000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:141231200-141237000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr3:141231200-141240200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:141231200-141240800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:141231200-141245000	Strong transcription	Fetal Thymus	thymus
22	chr3:141231600-141254400	Weak transcription	Fetal Kidney	kidney
23	chr3:141231600-141263600	Weak transcription	Fetal Brain Male	brain
24	chr3:141231800-141242600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:141232000-141241800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:141232200-141237800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:141232200-141245600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr3:141232200-141254400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:141232400-141236400	Strong transcription	HSMM	muscle
30	chr3:141232400-141240000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:141232600-141236400	Strong transcription	NH-A	brain
32	chr3:141232600-141239600	Strong transcription	Osteobl	bone
33	chr3:141232600-141244400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:141232800-141236600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:141232800-141236600	Strong transcription	Liver	Liver
36	chr3:141232800-141237200	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:141232800-141239600	Strong transcription	Primary T cells from cord blood	blood
38	chr3:141232800-141240000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:141233000-141236400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:141233000-141236600	Strong transcription	Adipose Nuclei	Adipose
41	chr3:141233200-141237000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:141233200-141237200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr3:141233400-141237400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:141233400-141237600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:141234000-141254400	Weak transcription	Right Ventricle	heart
46	chr3:141234200-141237400	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:141234400-141236200	Weak transcription	HMEC	breast
48	chr3:141234600-141237800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:141235000-141236600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr3:141235000-141237000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links