Variant report

Variant	rs57186859
Chromosome Location	chr10:96757963-96757964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1853206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2994704	1.00[AMR][1000 genomes]
rs55678425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59072208	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61267075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96757400-96758000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr10:96757400-96758000	Active TSS	Placenta	Placenta
3	chr10:96757400-96758200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:96757400-96758200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:96757400-96758200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:96757400-96758400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:96757400-96758400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:96757400-96758600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:96757600-96758000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:96757600-96758000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr10:96757600-96758000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr10:96757600-96758200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr10:96757600-96758400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:96757600-96758400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr10:96757800-96758000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr10:96757800-96758400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:96757800-96758400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:96757800-96758400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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