Variant report

Variant	rs57186895
Chromosome Location	chr6:144094879-144094880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:144094699-144095054	K562	blood:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878
2	CEBPB	chr6:144094708-144095041	HepG2	liver:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878
3	CEBPB	chr6:144094728-144095051	A549	lung:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878
4	CEBPB	chr6:144094785-144094901	H1-hESC	embryonic stem cell:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878
5	CEBPB	chr6:144094699-144095061	IMR90	lung:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878
6	CEBPB	chr6:144094761-144095037	Hela-S3	cervix:	n/a	chr6:144094867-144094880 chr6:144094867-144094878 chr6:144094869-144094878 chr6:144094867-144094878 chr6:144094868-144094879 chr6:144094869-144094878 chr6:144094867-144094880 chr6:144094867-144094880 chr6:144094869-144094878 chr6:144094869-144094878

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144094412..144096220-chr6:144126094..144128720,2	K562	blood:

Variant related genes	Relation type
PHACTR2	TF binding region
ENSG00000257065	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1018463	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155325	0.81[EUR][1000 genomes]
rs2144223	0.83[EUR][1000 genomes]
rs2295202	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6907533	0.85[EUR][1000 genomes]
rs6907636	0.83[EUR][1000 genomes]
rs722754	0.85[EUR][1000 genomes]
rs7754387	0.85[EUR][1000 genomes]
rs7770737	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067800-144095400	Weak transcription	NHLF	lung
2	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
3	chr6:144069400-144097800	Weak transcription	Gastric	stomach
4	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
5	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:144072600-144106400	Weak transcription	HMEC	breast
8	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
10	chr6:144077400-144095000	Weak transcription	NHEK	skin
11	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
12	chr6:144079000-144099600	Weak transcription	K562	blood
13	chr6:144079200-144095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:144080600-144095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:144080600-144101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:144081200-144096400	Weak transcription	Brain Angular Gyrus	brain
18	chr6:144081800-144095200	Weak transcription	Psoas Muscle	Psoas
19	chr6:144081800-144097600	Weak transcription	Esophagus	oesophagus
20	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
21	chr6:144083800-144098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:144085000-144113800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:144085200-144113800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:144086200-144099000	Weak transcription	Thymus	Thymus
25	chr6:144086200-144105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:144086600-144106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:144087000-144095000	Weak transcription	Aorta	Aorta
28	chr6:144087000-144106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:144087000-144122000	Weak transcription	Pancreas	Pancrea
30	chr6:144087200-144095000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:144087200-144097800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:144087200-144106000	Weak transcription	Spleen	Spleen
33	chr6:144087600-144096200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:144088000-144095000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:144088000-144095800	Weak transcription	Right Ventricle	heart
36	chr6:144088000-144106400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:144088600-144102800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:144088800-144113600	Weak transcription	A549	lung
39	chr6:144089400-144095000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:144090000-144095200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:144090000-144095200	Weak transcription	Primary T cells from cord blood	blood
42	chr6:144090000-144106400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:144090600-144095200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:144091400-144103600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:144091600-144098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:144092600-144098400	Strong transcription	Fetal Intestine Small	intestine
47	chr6:144092600-144100000	Strong transcription	Fetal Intestine Large	intestine
48	chr6:144092800-144096600	Genic enhancers	Placenta	Placenta
49	chr6:144092800-144096600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:144092800-144097200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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