Variant report

Variant	rs57189754
Chromosome Location	chr5:111618279-111618280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111612813..111614888-chr5:111617919..111620566,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10051088	0.96[ASN][1000 genomes]
rs12515435	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12519987	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12652337	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12654295	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12654353	1.00[EUR][1000 genomes]
rs12654372	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12657885	0.91[ASN][1000 genomes]
rs13170079	0.91[ASN][1000 genomes]
rs1608652	1.00[EUR][1000 genomes]
rs17134324	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17134333	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34640353	0.91[ASN][1000 genomes]
rs4957641	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4958030	0.93[ASN][1000 genomes]
rs4958031	0.84[AMR][1000 genomes]
rs4958032	0.97[ASN][1000 genomes]
rs4958034	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55638951	0.91[ASN][1000 genomes]
rs6862912	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7724582	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv599371	chr5:111519018-111676755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111586600-111626400	Weak transcription	Gastric	stomach
2	chr5:111590400-111628200	Weak transcription	Aorta	Aorta
3	chr5:111613200-111619600	Weak transcription	Fetal Brain Male	brain
4	chr5:111613200-111619800	Weak transcription	Fetal Brain Female	brain
5	chr5:111613400-111618600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:111617200-111621000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:111617400-111620200	Weak transcription	Psoas Muscle	Psoas
8	chr5:111618000-111618400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:111618000-111618400	Enhancers	Brain Anterior Caudate	brain
10	chr5:111618000-111621400	Enhancers	Fetal Heart	heart
11	chr5:111618200-111618400	Enhancers	Brain Hippocampus Middle	brain
12	chr5:111618200-111619000	Enhancers	Left Ventricle	heart
13	chr5:111618200-111619000	Enhancers	Pancreas	Pancrea
14	chr5:111618200-111619000	Enhancers	Right Atrium	heart

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