Variant report

Variant	rs57192077
Chromosome Location	chr13:52092408-52092409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58078212	0.89[AFR][1000 genomes]
rs60108223	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60591998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6650382	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7332922	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52090000-52097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52092000-52093800	Enhancers	A549	lung
3	chr13:52092000-52095400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:52092200-52094600	Enhancers	NHDF-Ad	bronchial
5	chr13:52092200-52094800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:52092400-52094600	Enhancers	HSMM	muscle
7	chr13:52092400-52094800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:52092400-52094800	Enhancers	Osteobl	bone
9	chr13:52092400-52095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:52092400-52095000	Enhancers	HMEC	breast
11	chr13:52092400-52095200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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