Variant report

Variant	rs571978076
Chromosome Location	chr2:177629245-177629246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr2:177628630-177629258	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr2:177628682-177629304	H1-hESC	embryonic stem cell:	n/a	n/a
3	JUND	chr2:177628538-177629399	H1-hESC	embryonic stem cell:	n/a	chr2:177628976-177628984 chr2:177628975-177628985 chr2:177628975-177628984 chr2:177628979-177628991 chr2:177628976-177628983
4	MAX	chr2:177628600-177629265	H1-hESC	embryonic stem cell:	n/a	chr2:177628976-177628985 chr2:177628975-177628984
5	MAFK	chr2:177628531-177629445	H1-hESC	embryonic stem cell:	n/a	n/a
6	EP300	chr2:177628726-177629274	H1-hESC	embryonic stem cell:	n/a	chr2:177628976-177628985 chr2:177628975-177628984
7	CHD2	chr2:177628775-177629306	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177627395..177629802-chr2:177630789..177633436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230552	TF binding region
ENSG00000230552	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv524841	chr2:177628258-177632714	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177623400-177634400	Weak transcription	Right Atrium	heart
2	chr2:177627800-177629600	Enhancers	Brain Germinal Matrix	brain
3	chr2:177628000-177630600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:177628200-177629400	Enhancers	Fetal Brain Female	brain
5	chr2:177628200-177629600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr2:177628200-177629800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:177628400-177631000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:177628600-177629400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr2:177628600-177631200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:177628800-177630400	Enhancers	Primary B cells from peripheral blood	blood
11	chr2:177628800-177630800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:177628800-177631400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:177628800-177655400	Weak transcription	Ovary	ovary
14	chr2:177629000-177629400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:177629000-177630800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:177629200-177629400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr2:177629200-177629600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr2:177629200-177629600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr2:177629200-177630800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr2:177629200-177631000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr2:177629200-177633400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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