Variant report

Variant	rs571998897
Chromosome Location	chr2:153191781-153191782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153030097..153032269-chr2:153191350..153193391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115145	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693434	chr2:152998467-153208713	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3375546	chr2:153190731-153193579	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153190800-153192800	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr2:153191000-153192800	Active TSS	Colonic Mucosa	Colon
3	chr2:153191000-153193200	Active TSS	Adipose Nuclei	Adipose
4	chr2:153191000-153193200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr2:153191000-153193200	Active TSS	Stomach Smooth Muscle	stomach
6	chr2:153191000-153193400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:153191000-153193400	Active TSS	Colon Smooth Muscle	Colon
8	chr2:153191000-153193600	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr2:153191000-153193800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:153191000-153194000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr2:153191000-153194400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr2:153191000-153194600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:153191200-153191800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:153191200-153191800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:153191200-153191800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:153191200-153192000	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr2:153191200-153192000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:153191200-153192800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr2:153191200-153192800	Active TSS	Right Ventricle	heart
20	chr2:153191200-153192800	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr2:153191200-153192800	Active TSS	GM12878-XiMat	blood
22	chr2:153191200-153193000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:153191200-153193000	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr2:153191200-153193000	Active TSS	Duodenum Mucosa	Duodenum
25	chr2:153191200-153193000	Active TSS	Fetal Heart	heart
26	chr2:153191200-153193000	Active TSS	Fetal Muscle Trunk	muscle
27	chr2:153191200-153193000	Active TSS	Pancreas	Pancrea
28	chr2:153191200-153193000	Active TSS	Rectal Smooth Muscle	rectum
29	chr2:153191200-153193000	Active TSS	Stomach Mucosa	stomach
30	chr2:153191200-153193200	Active TSS	Esophagus	oesophagus
31	chr2:153191200-153193200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr2:153191200-153193400	Active TSS	Fetal Kidney	kidney
33	chr2:153191200-153193400	Bivalent/Poised TSS	Thymus	Thymus
34	chr2:153191200-153193400	Active TSS	A549	lung
35	chr2:153191200-153193600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:153191200-153193600	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr2:153191200-153193600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:153191200-153193600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:153191200-153193600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr2:153191200-153193600	Active TSS	Aorta	Aorta
41	chr2:153191200-153193600	Active TSS	Left Ventricle	heart
42	chr2:153191200-153193600	Active TSS	Psoas Muscle	Psoas
43	chr2:153191200-153193600	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr2:153191200-153193600	Active TSS	Right Atrium	heart
45	chr2:153191200-153193800	Active TSS	H1 Cell Line	embryonic stem cell
46	chr2:153191200-153193800	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr2:153191200-153193800	Active TSS	Fetal Lung	lung
48	chr2:153191200-153193800	Active TSS	Ovary	ovary
49	chr2:153191200-153193800	Active TSS	HMEC	breast
50	chr2:153191200-153194000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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