Variant report

Variant	rs571999899
Chromosome Location	chr14:67656368-67656369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv983938	chr14:67656148-67670777	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67618400-67658200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:67639600-67658600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:67645800-67656400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:67645800-67658200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:67647800-67658400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:67648200-67658200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:67648200-67658200	Weak transcription	Brain Substantia Nigra	brain
8	chr14:67648200-67660400	Weak transcription	Ovary	ovary
9	chr14:67648400-67658000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:67648400-67658000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:67648400-67658400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:67648400-67658800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:67653200-67656400	Enhancers	Osteobl	bone
14	chr14:67653600-67656400	Enhancers	Placenta	Placenta
15	chr14:67654600-67657800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:67654800-67658200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:67654800-67658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:67654800-67658600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:67655000-67658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:67655000-67661800	Weak transcription	A549	lung
21	chr14:67655200-67658200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr14:67655400-67656800	Enhancers	Fetal Thymus	thymus
23	chr14:67655400-67658200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:67655400-67658200	Weak transcription	HSMMtube	muscle
25	chr14:67655400-67658800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:67655800-67656400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr14:67656000-67656400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:67656000-67656400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr14:67656000-67656400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr14:67656000-67656400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:67656000-67656400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:67656000-67656400	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr14:67656000-67656400	Flanking Active TSS	GM12878-XiMat	blood
34	chr14:67656000-67656600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr14:67656000-67656600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:67656000-67656600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr14:67656000-67656800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr14:67656000-67657000	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:67656200-67656400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:67656200-67656400	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr14:67656200-67656400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:67656200-67656400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr14:67656200-67656400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:67656200-67656400	Enhancers	Psoas Muscle	Psoas
45	chr14:67656200-67656400	Flanking Active TSS	HepG2	liver
46	chr14:67656200-67658200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:67656200-67658200	Weak transcription	HSMM	muscle

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