Variant report

Variant	rs572026455
Chromosome Location	chr12:117613448-117613449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:117606727..117609238-chr12:117612177..117615270,4	MCF-7	breast:
2	chr12:117606578..117609339-chr12:117613213..117615452,2	K562	blood:
3	chr12:117608161..117610702-chr12:117612350..117614705,2	K562	blood:
4	chr12:117600913..117606514-chr12:117609706..117614136,6	MCF-7	breast:
5	chr12:117611828..117614265-chr12:117616763..117619473,3	K562	blood:
6	chr12:117611249..117613740-chr12:117613939..117616846,3	MCF-7	breast:
7	chr12:117612768..117619869-chr12:117625654..117629590,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135108	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv899542	chr12:117549739-117623136	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a
3	esv3409292	chr12:117613281-117638743	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117578200-117617200	Strong transcription	Fetal Stomach	stomach
2	chr12:117579000-117618200	Strong transcription	Thymus	Thymus
3	chr12:117579200-117623000	Strong transcription	Primary T cells from cord blood	blood
4	chr12:117579400-117616800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117580000-117625000	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr12:117580000-117626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:117580400-117618800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:117580600-117625600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:117581200-117618400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:117581200-117624600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr12:117581400-117624200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:117581400-117625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr12:117581600-117618800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:117582200-117623400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr12:117582200-117625800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:117582400-117624400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:117585600-117619000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr12:117585600-117619800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:117585800-117625600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:117588800-117618800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:117588800-117619000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:117589400-117623600	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr12:117589600-117614600	Strong transcription	Lung	lung
24	chr12:117589600-117619400	Strong transcription	Brain Germinal Matrix	brain
25	chr12:117589800-117618800	Strong transcription	Fetal Brain Female	brain
26	chr12:117590000-117626200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:117590200-117618800	Strong transcription	Fetal Muscle Trunk	muscle
28	chr12:117590200-117626800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr12:117590600-117616600	Strong transcription	Fetal Muscle Leg	muscle
30	chr12:117590600-117618200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr12:117590600-117618400	Strong transcription	Adipose Nuclei	Adipose
32	chr12:117590600-117619000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:117590600-117619400	Strong transcription	Fetal Lung	lung
34	chr12:117590600-117625400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr12:117590600-117625600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:117590600-117625600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr12:117590600-117625800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:117590800-117619600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr12:117590800-117623400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr12:117590800-117625200	Strong transcription	Brain Anterior Caudate	brain
41	chr12:117591000-117620200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr12:117591000-117624600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr12:117593400-117619000	Strong transcription	Dnd41	blood
44	chr12:117593600-117619400	Strong transcription	Fetal Thymus	thymus
45	chr12:117593800-117625000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr12:117593800-117625600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr12:117593800-117625600	Strong transcription	Placenta	Placenta
48	chr12:117593800-117625800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr12:117594000-117625800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr12:117597600-117624400	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links