Variant report

Variant	rs572052208
Chromosome Location	chr11:93639054-93639055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv10748	chr11:93636188-93640796	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv11328	chr11:93638553-93641193	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93636400-93639600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:93637400-93641800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93638200-93639200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:93638400-93639200	Enhancers	Placenta	Placenta
5	chr11:93638400-93639200	Enhancers	HSMM	muscle
6	chr11:93638400-93640200	Enhancers	NH-A	brain
7	chr11:93638400-93640400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:93638400-93640600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:93638400-93643000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:93638600-93639200	Enhancers	HSMMtube	muscle
11	chr11:93638600-93640200	Enhancers	NHDF-Ad	bronchial
12	chr11:93638600-93642600	Enhancers	HMEC	breast
13	chr11:93638800-93639600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:93639000-93641200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:93639000-93641200	Weak transcription	NHEK	skin
16	chr11:93639000-93641400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:93639000-93641400	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links