Variant report

Variant	rs572069878
Chromosome Location	chr6:119381002-119381003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119375000-119382000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:119375200-119381200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:119375800-119381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:119378000-119381400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:119378200-119381400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:119378200-119381400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:119378200-119388400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:119380800-119383000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:119380800-119384400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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