Variant report

Variant	rs57208507
Chromosome Location	chr9:78767123-78767124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78762924..78764913-chr9:78765056..78767232,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11144770	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12552341	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12555662	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17785210	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3824474	0.82[EUR][1000 genomes]
rs4745509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4745510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4745512	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62556585	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs883830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893474	chr9:78753324-78784325	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78688000-78774000	Weak transcription	Left Ventricle	heart
2	chr9:78748400-78769200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:78751600-78773200	Weak transcription	Fetal Stomach	stomach
4	chr9:78752200-78772000	Weak transcription	Fetal Intestine Large	intestine
5	chr9:78752400-78773400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:78753600-78773400	Weak transcription	Ovary	ovary
7	chr9:78757200-78776400	Weak transcription	Psoas Muscle	Psoas
8	chr9:78760600-78771800	Weak transcription	Primary T cells from cord blood	blood
9	chr9:78760600-78773800	Weak transcription	Pancreas	Pancrea
10	chr9:78762400-78771800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr9:78762600-78773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:78762800-78780200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:78763400-78776400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:78763800-78776200	Weak transcription	Right Atrium	heart
15	chr9:78765000-78767200	Strong transcription	Fetal Intestine Small	intestine
16	chr9:78765000-78767200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:78765400-78768600	Weak transcription	Adipose Nuclei	Adipose
18	chr9:78765600-78769200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:78765800-78776000	Weak transcription	Fetal Lung	lung
20	chr9:78766000-78767200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:78766000-78773400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:78766200-78772000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr9:78766200-78773200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:78766400-78770400	Weak transcription	Aorta	Aorta
25	chr9:78766400-78776000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:78766400-78790000	Weak transcription	Spleen	Spleen
27	chr9:78766600-78771800	Weak transcription	Thymus	Thymus
28	chr9:78766600-78772000	Weak transcription	Fetal Thymus	thymus
29	chr9:78766600-78773800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:78766600-78774200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:78766600-78785200	Weak transcription	Fetal Kidney	kidney
32	chr9:78766800-78768200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr9:78767000-78767200	Enhancers	Rectal Mucosa Donor 29	rectum

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