Variant report
Variant | rs57208928 |
---|---|
Chromosome Location | chr20:15779853-15779854 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs16996564 | 1.00[EUR][1000 genomes] |
rs16996604 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2041424 | 1.00[EUR][1000 genomes] |
rs73244078 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs73244100 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs73246120 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73246148 | 1.00[EUR][1000 genomes] |
rs73246149 | 1.00[EUR][1000 genomes] |
rs73246165 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73246167 | 0.84[AFR][1000 genomes] |
rs73246195 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15770800-15780000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |