Variant report

Variant	rs57209118
Chromosome Location	chr11:113240612-113240613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113237705..113239247-chr11:113239869..113242413,2	K562	blood:

Variant related genes	Relation type
ENSG00000270179	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4412783	1.00[AMR][1000 genomes]
rs57999763	1.00[AMR][1000 genomes]
rs60745883	1.00[AMR][1000 genomes]
rs73572797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113203200-113248200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:113210600-113243600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:113213000-113243000	Weak transcription	NHLF	lung
4	chr11:113215400-113243600	Weak transcription	Osteobl	bone
5	chr11:113226600-113242400	Strong transcription	Stomach Smooth Muscle	stomach
6	chr11:113227400-113241200	Weak transcription	Psoas Muscle	Psoas
7	chr11:113227800-113241000	Strong transcription	Adipose Nuclei	Adipose
8	chr11:113228400-113240800	Strong transcription	Fetal Intestine Large	intestine
9	chr11:113228600-113241600	Strong transcription	Fetal Intestine Small	intestine
10	chr11:113229200-113246800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:113229400-113246600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:113229800-113243800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:113230400-113241000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:113230400-113243800	Weak transcription	HSMMtube	muscle
15	chr11:113230600-113246400	Weak transcription	Fetal Heart	heart
16	chr11:113231800-113246000	Weak transcription	Fetal Brain Male	brain
17	chr11:113232000-113243800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:113232200-113257400	Weak transcription	Small Intestine	intestine
19	chr11:113233800-113241400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:113235000-113243600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:113235400-113243000	Weak transcription	HSMM	muscle
22	chr11:113236000-113241000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:113236200-113243000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:113236400-113241200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:113236400-113243400	Weak transcription	Fetal Lung	lung
26	chr11:113236400-113248200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:113236600-113241200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:113236800-113243600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:113236800-113246200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:113236800-113248400	Weak transcription	Placenta	Placenta
31	chr11:113237000-113241000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:113237200-113241000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:113237200-113241400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:113237200-113241800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:113237200-113241800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:113237200-113243400	Weak transcription	Esophagus	oesophagus
37	chr11:113237400-113240800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:113237400-113241600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:113237600-113241200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:113237800-113241200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:113237800-113241200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:113238000-113248200	Weak transcription	Thymus	Thymus
43	chr11:113238200-113240800	Strong transcription	Ovary	ovary
44	chr11:113238200-113243400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:113238600-113241000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:113239000-113241400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:113239000-113242600	Weak transcription	Fetal Thymus	thymus
48	chr11:113239400-113241000	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:113239400-113241000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:113239400-113241000	Weak transcription	Rectal Mucosa Donor 31	rectum

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