Variant report

Variant	rs572130337
Chromosome Location	chr16:59635478-59635479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv572832	chr16:59578561-59756567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv827695	chr16:59617082-59700873	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv9451	chr16:59635240-60032841	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59625600-59639400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:59631400-59637200	Weak transcription	NHLF	lung
3	chr16:59631800-59637200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:59631800-59638400	Weak transcription	HSMM	muscle
5	chr16:59634000-59636400	Weak transcription	Brain Anterior Caudate	brain
6	chr16:59634800-59636600	Enhancers	Brain Cingulate Gyrus	brain
7	chr16:59634800-59637600	Enhancers	Brain Hippocampus Middle	brain
8	chr16:59635000-59635600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr16:59635000-59637400	Enhancers	Brain Substantia Nigra	brain
10	chr16:59635200-59635600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:59635200-59635600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr16:59635200-59635600	Enhancers	NHDF-Ad	bronchial
13	chr16:59635200-59635800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:59635200-59640200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:59635400-59636400	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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