Variant report

Variant	rs572135912
Chromosome Location	chr3:159724539-159724540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546031..159546605-chr3:159724021..159724764,2	MCF-7	breast:
2	chr3:159647281..159647881-chr3:159724273..159724824,2	MCF-7	breast:
3	chr3:159602350..159603648-chr3:159724014..159724862,4	MCF-7	breast:
4	chr3:159545989..159547250-chr3:159724070..159724936,3	MCF-7	breast:
5	chr3:159647093..159647612-chr3:159724029..159724614,3	MCF-7	breast:
6	chr3:159479933..159482326-chr3:159723100..159725647,2	MCF-7	breast:
7	chr3:159602300..159603246-chr3:159724184..159724957,3	K562	blood:
8	chr3:159602722..159603235-chr3:159724067..159724970,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159721000-159730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159722800-159725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:159722800-159725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:159723400-159724800	Enhancers	GM12878-XiMat	blood
7	chr3:159723600-159724800	Enhancers	NHDF-Ad	bronchial
8	chr3:159723800-159724600	Enhancers	Fetal Muscle Leg	muscle
9	chr3:159723800-159724800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:159724000-159725000	Enhancers	NHLF	lung
11	chr3:159724200-159724600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:159724200-159724600	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:159724200-159724600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:159724200-159724600	Enhancers	Brain Anterior Caudate	brain
15	chr3:159724200-159724600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:159724200-159724600	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:159724200-159724800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:159724200-159724800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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