Variant report

Variant	rs572174657
Chromosome Location	chr2:64361573-64361574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64360045..64362986-chr2:64369737..64372450,3	MCF-7	breast:
2	chr2:64361298..64364735-chr2:64368847..64372376,4	MCF-7	breast:
3	chr2:64360272..64363388-chr2:64364975..64368007,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197329	Chromatin interaction
ENSG00000225889	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1013132	chr2:64235175-64631084	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757803	chr2:64253005-64539556	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv2759055	chr2:64253005-64539556	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv428396	chr2:64253005-64539556	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv34698	chr2:64312142-64521366	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	esv34955	chr2:64312182-64521290	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv834243	chr2:64316514-64476935	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1006553	chr2:64339907-64764771	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv9957	chr2:64341714-64518231	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	esv13275	chr2:64342247-64515169	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
12	nsv1012905	chr2:64342469-64508983	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
13	nsv1013735	chr2:64342469-64512286	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	esv3693324	chr2:64342469-64513207	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	nsv999608	chr2:64342469-64517459	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	nsv1000390	chr2:64343861-64512286	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
17	esv2756924	chr2:64349202-64521290	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	nsv1004574	chr2:64360195-64478171	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64323600-64364400	Weak transcription	Fetal Brain Male	brain
2	chr2:64335000-64365200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:64340400-64370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:64342000-64365200	Weak transcription	Left Ventricle	heart
5	chr2:64342800-64362200	Weak transcription	Thymus	Thymus
6	chr2:64343800-64361800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:64347400-64368800	Weak transcription	Spleen	Spleen
8	chr2:64348400-64364600	Weak transcription	Adipose Nuclei	Adipose
9	chr2:64348400-64366400	Weak transcription	Right Atrium	heart
10	chr2:64348600-64361600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr2:64348600-64365200	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:64349800-64363800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr2:64350400-64364600	Weak transcription	Primary B cells from cord blood	blood
14	chr2:64351400-64364400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:64354600-64365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:64354800-64363600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:64354800-64364200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:64355000-64362400	Weak transcription	Small Intestine	intestine
19	chr2:64355400-64368800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:64355800-64364400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:64356200-64368600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:64356400-64364000	Weak transcription	Brain Angular Gyrus	brain
23	chr2:64356400-64365200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:64356400-64368200	Weak transcription	Brain Germinal Matrix	brain
25	chr2:64356400-64368800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:64357200-64367000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:64357200-64368200	Weak transcription	Liver	Liver
28	chr2:64357200-64369600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:64357800-64363400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:64357800-64366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:64357800-64367000	Weak transcription	HepG2	liver
32	chr2:64358200-64361800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr2:64358200-64362000	Weak transcription	Fetal Lung	lung
34	chr2:64358200-64364600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr2:64358800-64362400	Enhancers	Colon Smooth Muscle	Colon
36	chr2:64358800-64365000	Weak transcription	Fetal Intestine Large	intestine
37	chr2:64359000-64362400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr2:64359000-64363000	Enhancers	HMEC	breast
39	chr2:64359000-64363800	Weak transcription	Lung	lung
40	chr2:64359000-64368800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr2:64359000-64368800	Weak transcription	Right Ventricle	heart
42	chr2:64359200-64362400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr2:64359200-64363000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:64359200-64363200	Enhancers	NHEK	skin
45	chr2:64359200-64363400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:64359200-64366200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr2:64359400-64362600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr2:64359400-64365400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr2:64359400-64365600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:64359400-64368600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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