Variant report

Variant	rs572189134
Chromosome Location	chr7:99296544-99296545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99296360..99298503-chr7:99313450..99315683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160870	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99291400-99297600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:99291400-99297600	Weak transcription	Esophagus	oesophagus
3	chr7:99291400-99298800	Weak transcription	Aorta	Aorta
4	chr7:99291400-99306600	Weak transcription	Left Ventricle	heart
5	chr7:99292200-99297000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:99292400-99298600	Enhancers	HepG2	liver
7	chr7:99293600-99297000	Weak transcription	Gastric	stomach
8	chr7:99294200-99301600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:99294400-99301400	Weak transcription	Liver	Liver
10	chr7:99295600-99297600	Enhancers	Fetal Intestine Large	intestine
11	chr7:99295800-99296800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:99295800-99297400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:99295800-99297400	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:99295800-99297400	Enhancers	NHEK	skin
15	chr7:99295800-99297800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr7:99295800-99298200	Enhancers	K562	blood
17	chr7:99296000-99297400	Weak transcription	Pancreas	Pancrea
18	chr7:99296000-99297800	Enhancers	Fetal Intestine Small	intestine
19	chr7:99296200-99297400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr7:99296200-99297800	Enhancers	Hela-S3	cervix
21	chr7:99296400-99296600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:99296400-99296600	Flanking Active TSS	A549	lung
23	chr7:99296400-99296800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:99296400-99296800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:99296400-99296800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:99296400-99296800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:99296400-99296800	Weak transcription	Stomach Mucosa	stomach
28	chr7:99296400-99296800	Enhancers	HUVEC	blood vessel
29	chr7:99296400-99297400	Enhancers	HMEC	breast
30	chr7:99296400-99297800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:99296400-99297800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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