Variant report

Variant	rs572216783
Chromosome Location	chr1:84524339-84524340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84524044..84526029-chr1:84541192..84543741,2	K562	blood:
2	chr1:84516996..84518865-chr1:84523452..84525021,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271576	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1732	chr1:84499098-84544635	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv508360	chr1:84500230-84524997	Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3498832	chr1:84514725-84525109	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3498833	chr1:84514725-84525109	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2479910	chr1:84516210-84524807	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv988476	chr1:84516695-84526005	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv435898	chr1:84516977-84525237	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2456007	chr1:84517004-84525140	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv436189	chr1:84517114-84524632	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv511703	chr1:84517154-84525538	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv871655	chr1:84517261-84550849	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3406821	chr1:84517512-84524929	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3519799	chr1:84517664-84525662	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv8773	chr1:84517666-84524907	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1935205	chr1:84517744-84524848	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3519797	chr1:84517759-84525101	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3371456	chr1:84517832-84524737	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3519794	chr1:84517841-84524718	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3519793	chr1:84517855-84524666	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3320345	chr1:84517868-84524702	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3519795	chr1:84517871-84524684	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3320347	chr1:84517880-84524657	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3519798	chr1:84517883-84524669	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3519792	chr1:84517887-84524743	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3432625	chr1:84517889-84524651	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3939	chr1:84517896-84524690	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv3320346	chr1:84517910-84524637	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv3320348	chr1:84517911-84524699	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv498674	chr1:84517925-84524644	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv3320349	chr1:84517926-84524644	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv3519800	chr1:84517926-84524644	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv3390094	chr1:84523389-84525937	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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