Variant report

Variant	rs572272477
Chromosome Location	chr15:75743137-75743138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75741578..75748624-chr15:75927989..75935113,20	K562	blood:
2	chr15:75657601..75665504-chr15:75739437..75749700,27	K562	blood:
3	chr15:75743021..75745154-chr15:78857416..78860250,2	MCF-7	breast:
4	chr15:75741664..75745730-chr15:75869940..75872786,3	MCF-7	breast:
5	chr15:75742140..75749687-chr15:75929409..75934974,27	MCF-7	breast:
6	chr15:75658070..75664945-chr15:75741625..75749756,25	K562	blood:
7	chr15:75741052..75746522-chr15:75930202..75934500,7	MCF-7	breast:
8	chr15:75741578..75748579-chr15:75928515..75935579,16	K562	blood:
9	chr15:75639207..75640858-chr15:75743116..75744779,2	MCF-7	breast:
10	chr15:75627797..75629612-chr15:75743113..75745396,2	K562	blood:
11	chr15:75741711..75746813-chr15:75868980..75872679,7	MCF-7	breast:
12	chr15:75640869..75642530-chr15:75742504..75744688,2	K562	blood:
13	chr15:75656095..75662590-chr15:75739456..75750037,27	MCF-7	breast:
14	chr15:75657484..75665083-chr15:75741604..75749517,41	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169684	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000177971	Chromatin interaction
ENSG00000169410	Chromatin interaction
ENSG00000260206	Chromatin interaction
ENSG00000140400	Chromatin interaction
ENSG00000140365	Chromatin interaction
ENSG00000140398	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv904387	chr15:75706296-75806911	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv904388	chr15:75730182-75804543	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv904389	chr15:75739824-75806911	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv827389	chr15:75741918-75749453	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
13	esv3423390	chr15:75742324-75744872	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75741600-75743200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr15:75741600-75748800	Active TSS	Ovary	ovary
3	chr15:75741800-75743200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:75741800-75749000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:75742000-75743200	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr15:75742000-75744800	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr15:75742000-75748800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:75742200-75743200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr15:75742200-75743200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr15:75742200-75743200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr15:75742200-75744600	Active TSS	NHLF	lung
12	chr15:75742200-75744800	Active TSS	HSMMtube	muscle
13	chr15:75742200-75745200	Active TSS	NHDF-Ad	bronchial
14	chr15:75742200-75745400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr15:75742200-75745800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:75742200-75746400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr15:75742200-75748600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr15:75742200-75748600	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr15:75742200-75748600	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr15:75742200-75748600	Active TSS	A549	lung
21	chr15:75742200-75748800	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:75742200-75748800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr15:75742200-75748800	Active TSS	Fetal Kidney	kidney
24	chr15:75742200-75748800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr15:75742200-75749000	Active TSS	Psoas Muscle	Psoas
26	chr15:75742400-75743200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr15:75742400-75743200	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr15:75742400-75743200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:75742400-75743200	Flanking Active TSS	Fetal Brain Male	brain
30	chr15:75742400-75743200	Active TSS	Fetal Heart	heart
31	chr15:75742400-75744400	Active TSS	Placenta	Placenta
32	chr15:75742400-75744400	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr15:75742400-75744600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:75742400-75744600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:75742400-75744600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:75742400-75744600	Active TSS	Muscle Satellite Cultured Cells	--
37	chr15:75742400-75744600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:75742400-75744600	Active TSS	Fetal Stomach	stomach
39	chr15:75742400-75744600	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr15:75742400-75744600	Active TSS	HMEC	breast
41	chr15:75742400-75744600	Active TSS	NHEK	skin
42	chr15:75742400-75744800	Active TSS	Fetal Brain Female	brain
43	chr15:75742400-75745000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:75742400-75745000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:75742400-75745000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:75742400-75745000	Active TSS	K562	blood
47	chr15:75742400-75745200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:75742400-75745200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr15:75742400-75745200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:75742400-75745200	Active TSS	Fetal Intestine Small	intestine

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