Variant report

Variant	rs572301909
Chromosome Location	chr4:26453964-26453965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10467	chr4:26442264-26454782	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3464934	chr4:26442625-26454253	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3464936	chr4:26442630-26454272	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3464935	chr4:26442653-26454262	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3464937	chr4:26442766-26454169	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv515501	chr4:26446006-26457168	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv878767	chr4:26451326-26463490	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv10468	chr4:26453879-26462957	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
2	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26440800-26454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:26443600-26454200	Weak transcription	Fetal Lung	lung
5	chr4:26445000-26461000	Weak transcription	HSMM	muscle
6	chr4:26446600-26456000	Weak transcription	HSMMtube	muscle
7	chr4:26453200-26459600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:26453400-26454000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:26453400-26454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:26453400-26454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:26453400-26455000	Enhancers	Colon Smooth Muscle	Colon
12	chr4:26453400-26455200	Enhancers	Fetal Thymus	thymus
13	chr4:26453600-26454400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:26453600-26455000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:26453600-26455000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:26453600-26455000	Enhancers	Primary hematopoietic stem cells	blood
17	chr4:26453600-26455000	Enhancers	Rectal Smooth Muscle	rectum
18	chr4:26453600-26455200	Enhancers	Ovary	ovary
19	chr4:26453600-26455800	Enhancers	Pancreas	Pancrea
20	chr4:26453800-26454200	Enhancers	Fetal Stomach	stomach
21	chr4:26453800-26454600	Enhancers	Fetal Intestine Small	intestine
22	chr4:26453800-26454800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:26453800-26454800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:26453800-26455200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:26453800-26455200	Enhancers	HepG2	liver
26	chr4:26453800-26456800	Weak transcription	Osteobl	bone

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