Variant report

Variant	rs572303197
Chromosome Location	chr2:58655848-58655849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3395723	chr2:58654473-58657321	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv3323812	chr2:58654573-58657096	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv3437316	chr2:58654648-58656446	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58654200-58656000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:58654400-58656200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:58654400-58656200	Active TSS	Fetal Stomach	stomach
4	chr2:58654400-58656400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr2:58654400-58656400	Active TSS	Fetal Brain Female	brain
6	chr2:58654400-58656600	Active TSS	NH-A	brain
7	chr2:58654400-58657000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:58654600-58656000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:58654600-58656200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:58654600-58656200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:58654600-58656200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:58654600-58656200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr2:58654600-58656200	Active TSS	Duodenum Mucosa	Duodenum
14	chr2:58654600-58656400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr2:58654600-58656400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:58654600-58656400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:58654600-58656400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:58654600-58656400	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr2:58654600-58656400	Active TSS	Ovary	ovary
20	chr2:58654600-58656600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:58654600-58656600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr2:58654600-58656800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr2:58654800-58656000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:58654800-58656000	Active TSS	Thymus	Thymus
25	chr2:58654800-58656200	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr2:58654800-58656200	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr2:58654800-58656200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:58654800-58656200	Bivalent/Poised TSS	Esophagus	oesophagus
29	chr2:58654800-58656200	Active TSS	Fetal Intestine Small	intestine
30	chr2:58654800-58656200	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr2:58654800-58656200	Active TSS	Pancreas	Pancrea
32	chr2:58654800-58656200	Active TSS	Rectal Smooth Muscle	rectum
33	chr2:58654800-58656200	Active TSS	HSMM	muscle
34	chr2:58654800-58656200	Bivalent/Poised TSS	HSMMtube	muscle
35	chr2:58654800-58656200	Active TSS	NHDF-Ad	bronchial
36	chr2:58654800-58656400	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr2:58654800-58656400	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr2:58654800-58656400	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr2:58654800-58656400	Active TSS	Brain Substantia Nigra	brain
40	chr2:58654800-58656400	Active TSS	Fetal Kidney	kidney
41	chr2:58654800-58656600	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr2:58654800-58656600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:58654800-58656600	Active TSS	Brain Angular Gyrus	brain
44	chr2:58654800-58656600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:58654800-58656800	Active TSS	Brain Hippocampus Middle	brain
46	chr2:58654800-58657000	Active TSS	Brain Germinal Matrix	brain
47	chr2:58655000-58656200	Active TSS	Fetal Muscle Leg	muscle
48	chr2:58655000-58656200	Active TSS	A549	lung
49	chr2:58655000-58656400	Active TSS	Right Ventricle	heart
50	chr2:58655000-58656600	Active TSS	Fetal Brain Male	brain

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