Variant report

Variant	rs572305588
Chromosome Location	chr11:49849466-49849467
allele	-/ACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:49849464-49849508	LNCaP	prostate:	n/a	n/a

Variant related genes	Relation type
ENSG00000255268	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897491	chr11:49498923-50058422	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2757443	chr11:49581925-49862647	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
5	esv2759826	chr11:49581925-49862647	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
6	nsv897493	chr11:49596079-49862647	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
7	nsv1051021	chr11:49692184-50658777	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv2760533	chr11:49699567-50025986	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1035961	chr11:49727385-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv33425	chr11:49732291-50058422	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1035638	chr11:49739352-50025974	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv1043841	chr11:49746568-49862647	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
13	nsv1037200	chr11:49757490-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv1043688	chr11:49766149-49852028	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
15	nsv1045103	chr11:49769791-50022107	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv1048979	chr11:49787157-49862647	Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
17	nsv1048074	chr11:49823455-50302232	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	nsv1049090	chr11:49840129-49862647	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
19	nsv1050126	chr11:49841256-49862647	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
20	nsv1050476	chr11:49841717-49862647	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
21	nsv467876	chr11:49845560-50057854	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv554392	chr11:49845560-50057854	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv554393	chr11:49845560-50122001	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv1036701	chr11:49846590-50769305	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
25	nsv982943	chr11:49846868-49854159	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
26	nsv1037582	chr11:49847127-49862647	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	nsv438184	chr11:49849181-49854707	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links