Variant report

Variant	rs572309689
Chromosome Location	chr7:139710517-139710518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139710366..139712669-chr7:139733842..139735376,2	MCF-7	breast:
2	chr7:139708154..139710835-chr7:139713818..139716854,4	K562	blood:
3	chr7:139708923..139710812-chr7:139717040..139718668,2	K562	blood:

Variant related genes	Relation type
ENSG00000059378	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3355856	chr7:139708308-139710856	Weak transcription Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv889246	chr7:139710148-139771380	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
2	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
4	chr7:139702200-139712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:139702200-139721800	Weak transcription	Fetal Thymus	thymus
6	chr7:139702400-139722400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:139702600-139742200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:139703200-139727800	Weak transcription	Right Atrium	heart
9	chr7:139704200-139728800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:139705400-139722000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:139706000-139727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:139706400-139710600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:139706400-139718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:139707200-139711400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:139707600-139713200	Weak transcription	Lung	lung
16	chr7:139707800-139722200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:139708400-139711800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:139708600-139710600	Enhancers	Pancreas	Pancrea
19	chr7:139708600-139710600	Enhancers	Stomach Mucosa	stomach
20	chr7:139708800-139717000	Weak transcription	Esophagus	oesophagus
21	chr7:139709200-139713200	Weak transcription	Spleen	Spleen
22	chr7:139709200-139715200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:139709400-139721400	Weak transcription	Liver	Liver
24	chr7:139709800-139710600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr7:139709800-139711600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:139710000-139710800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:139710000-139711000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:139710000-139722000	Weak transcription	Gastric	stomach
29	chr7:139710200-139710600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr7:139710200-139710600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:139710200-139710600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr7:139710200-139710600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr7:139710200-139710600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:139710200-139710800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr7:139710200-139711400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:139710200-139721600	Weak transcription	Fetal Intestine Small	intestine
37	chr7:139710400-139710600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:139710400-139710600	Enhancers	Brain Cingulate Gyrus	brain
39	chr7:139710400-139713000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr7:139710400-139717000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:139710400-139727600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links