Variant report

Variant	rs57237787
Chromosome Location	chr12:30019387-30019388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10431222	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10431276	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10771589	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10771590	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10771591	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771592	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10843527	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10843528	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10843529	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10843531	0.92[ASN][1000 genomes]
rs10843537	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10843538	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10843539	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11050509	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11050511	0.94[ASN][1000 genomes]
rs11050521	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050523	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12226994	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12227581	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12227846	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12227886	0.91[ASN][1000 genomes]
rs12229602	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2062292	0.87[EUR][1000 genomes]
rs2129137	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2129140	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2351015	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4622345	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58304678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59181833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133046	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7135043	0.87[EUR][1000 genomes]
rs7299824	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7302158	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7307169	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7952895	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7958365	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7973763	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv557975	chr12:30000388-30022105	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv20785	chr12:30014747-30022341	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv557976	chr12:30015190-30022255	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30018200-30023600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links